Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq20 221 2e-52 seq27 86.0 9e-12 >seq20 Length=946066 Score = 221 bits (244), Expect = 2e-52 Identities = 1137/1793 (63%), Gaps = 44/1793 (2%) Strand=Plus/Plus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | ||||| |||||||| | || || | | ||||| ||||||||||| Sbjct 120247 TTCTTGATCGACGGTGAATTGAATGGGTGCAGAAGCAGCCATAGTACGGAGATAGTACAT 120306 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || || || ||||| || ||||||| || |||||| || | || | Sbjct 120307 GCCGGTCTTGAGACCAAGCTTCCATCCAGCAAAGTGCATGGAAGTGATCTTACCCATGGT 120366 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || || || || || |||| ||||| || || |||||||| || | ||||| Sbjct 120367 GGGTTCCTTCATGTGGATGTTCAAAGACTGGGACTGGTCAATGAAAGCACCACGGTCAGC 120426 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||| | || || || |||| || ||||| | ||| ||| | | | |||| | Sbjct 120427 GGCCATCTGGATGATAGTGCGCTGAGAGATCTCCCAGACAGTCTTGTAGAGGTTTTTGGT 120486 Query 75604 ATCATCTGGAAGATTTGTATTT---TGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 || || || | || | | || ||||| || ||||| |||| || || ||||| Sbjct 120487 CTCTTCAGGGATGTTGGGAATTCGCTGAATCGAGCCGCCCTCAGCAATGATGCGGTTCTT 120546 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | ||| ||| | | ||| | | | || || || || || | Sbjct 120547 CATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGAGCAGCCATGGGTTGACCAC 120606 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| || ||||| | | || | |||| ||| || || || ||||| || | | Sbjct 120607 TTGGAACTCTCCGGCAAGCACACGGCGAGAGTAGATGTTCGATGTGTATGGCTCAAAGCA 120666 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||| ||||| || | |||||||| ||||| ||||| ||||| ||||| || | || Sbjct 120667 TTCGTTGTTGCCGAGAATTTGAGATGTTGAGGCAGTAGGCATGGGTGCAACGAGTAGGGA 120726 Query 75841 ATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 || | || ||||| || | || || || || | | ||| ||||| ||||| | Sbjct 120727 GTTGCGGACGCCATGCTGGGCA-ATCTTCTCCTTCAATGAAGCCCAGTCCCAGAGATCAG 120785 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTT-GCTAGCATATGATCCATTA 75958 ||| ||| ||||||||||||| || || || | | || | ||| || | Sbjct 120786 TGGGTGTGACACCCCAGAGATCGTACTGGAGCTGGCCCTGAGATA-CTGGTGAACCTTGG 120844 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 ||||| ||||| | || || || || | |||||| | | ||| ||| Sbjct 120845 TATGTCTCGTACGGGCCAAGCTCTTTGGCAATGTCGCAAGATGAAGTGAGAGCAGCGTGG 120904 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA-AAAGGATA 76077 ||||| |||||||| |||| | || || | | || || | || | ||||| | Sbjct 120905 TAAATGGTTTCGAAGATCTGAATGTTGAGCTTCTTTGCCTC--GGCTGACTCAAAGGGCA 120962 Query 76078 ATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTC 76136 | | |||| | || ||||| || || || || || |||| |||||| || || || | Sbjct 120963 GTCTCAAAGCGAGGAAAGCATCAGCAAGACCTTGTACACCAAGACCAATGGGCCTGTGAC 121022 Query 76137 TCTTATTGGAAATTTCAGCTTCTGG-------AATAGGGTAATAATTAATATCTATAATT 76189 |||| || | || | | || ||| || | || | || || || Sbjct 121023 -------GGAAGTTACTGCGGCGTGCCTCCTCAACAGGATAGTGGTTGACCTCAATGATC 121075 Query 76190 TTATTGAGATTTC---TGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT 76246 ||||||||||| | ||||||| | | || || | ||||| | || || || Sbjct 121076 TTATTGAGATTGCGAGTGACAACC---TGAGTGACTTCATGAAGTTTCTGGAAGTCGAAC 121132 Query 76247 TTTCCA----TCTA-TCAC--AAACATATTAAGAGCTATAGATGCTAGATTACAAACGGC 76299 | ||| | || ||| ||| || || ||| | ||| || || || || || || Sbjct 121133 TCGCCACGCTTATAGTCAACGAAAGATGGCAA-AGCGAGAGAGGCAAGGTTGCAGACAGC 121191 Query 76300 TACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGT 76359 ||||||| | | | ||| | || ||||| ||||| || ||| || ||| || Sbjct 121192 AACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGCAGAGGTTAGAACTGCGGATGGT 121251 Query 76360 TCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGT 76419 || || || | ||||||||||| |||| || | ||||| || || | || || | Sbjct 121252 ACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTATAGCATGAAGGGGTT 121311 Query 76420 TCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAG 76478 ||||||||| |||| | |||| ||| | | ||||| | ||| ||| | | Sbjct 121312 ACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGA-GCTTCTGAGCACGAACAGTCT 121370 Query 76479 ATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAA 76538 | || ||| | || || | || | | |||||| ||||| || | | Sbjct 121371 CGCGGCCACGGCCCTCGCGCTCGTAACGATGGTAGAGCTCTTCAAACTCATCGCCATAGA 121430 Query 76539 CATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAA 76598 | ||| | | ||||| || || || || | ||||| ||| ||||| | |||| | Sbjct 121431 CGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTCCATTCACCGTTCTCCTGGA 121490 Query 76599 CCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTT 76658 | || ||||| || ||||| || ||||| || ||| || ||||| |||| | | || Sbjct 121491 CACGCTTCATGAAAAGATCTGGGATCCAGAGGGCATAGAAGAGATCGCGGGCACGAACTT 121550 Query 76659 CTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTT 76718 |||| || || |||||| || || ||||| | | | ||||| ||||||||| | Sbjct 121551 CTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAACCAAAGACATCAGCATGCCATGGCT 121610 Query 76719 CTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAG 76778 | || || || || | ||||||| || || || || |||||||| | ||| | |||| Sbjct 121611 CGAGGTAGATGGCAAATGCACCCGGGCGCTTGTTGCCACCCTGATCGACATAACGAGCAG 121670 Query 76779 TGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAA 76838 |||| || ||||| | | ||| ||||| | ||||| || |||||||| || || | Sbjct 121671 TGTTGTTGTAAACACGAAGCATAGGAATGAGACCGTTTGAAGTACCATTAGTGCCTCCGA 121730 Query 76839 TATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAG 76898 | || ||| ||||| || | | | || || || || || || | || | Sbjct 121731 TGTATGAGCCAGTGGCACGGATGCGATGCACATTGAGACCAATACCGCCAGCAGTCTTGG 121790 Query 76899 AGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958 |||| || |||||| || | |||||| || || ||||| || || || ||| |||||| Sbjct 121791 AGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGT 121850 Query 76959 TAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAG 77018 || ||| || || ||||| ||| | | || ||||| || || | ||| || | Sbjct 121851 CAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGG 121910 Query 77019 ATGCATGAGTGAACCATTTTTCAGAAA-GTAGATTGTATGTTTCAATAACTGCTTCTATA 77077 | || || ||||| | || | || | |||| | |||||||||||| | ||| || Sbjct 121911 AAGCGTGTGTGAAGTACTTCTGGGACATGTAG-TCGTATGTTTCAATCGCCTTTTCAATG 121969 Query 77078 TCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 || | ||| || ||||| || |||||||||| |||||| || ||||| || Sbjct 121970 TCTTCTCCATGTATGCCTACGGCAACACGCATCAGCATATGTTGTGGTCGCTC 122022 >seq27 Length=812739 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || ||||| || || || | ||| ||||| | | || | ||||| || || || Sbjct 400706 AAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTC 400765 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || || ||||| || |||||||| ||||||||||| || | || || || ||| ||| Sbjct 400766 AGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAAG 400825 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAG 46778 || || || || ||||| ||||| || ||||| Sbjct 400826 AAGATACCCTCGACAGCAGCGAAGGCAACAAG 400857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931833436160