Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq82 107 4e-18 >seq82 Length=92890 Score = 107 bits (118), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| || || |||||||||||||| |||| || || | |||||| Sbjct 13483 AGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 13542 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| | | ||||||||| | | ||| || ||||| | Sbjct 13543 TCGAGCTGCTTT--CCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCCTTAT 13600 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | | || ||| |||||| || || || || | Sbjct 13601 CCTGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTACCTCGAGGGTGATGG 13660 Query 152071 TTTTGCCCGTGA 152082 | ||||| |||| Sbjct 13661 TCTTGCCGGTGA 13672 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| || || || ||||| ||||||||||| |||| | ||| | ||||| Sbjct 12964 GAGTACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATC 13023 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || |||||||| || | ||| ||||| | | || |||||||| || Sbjct 13024 TTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC 13083 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || ||||| | || | |||| || || || || || ||||| || Sbjct 13084 TTGAATCTTGGACTTGACGTTGTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGT 13143 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| ||||| | ||||| Sbjct 13144 CTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| ||||| |||||||| || ||||||||||| || | | || | || ||| Sbjct 13193 AGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTACGGCCGTCT 13252 Query 151953 TCTAG--GCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||||||||| |||| | |||||||| | | || |||||||| Sbjct 13253 TCGAGCTGCTTT--CCGGCGAAGATCAAGCGT-TGCTGGTCAGGAGGAATGCCTTCCTTA 13309 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || ||||| | || | | | ||||| || ||||| || || || Sbjct 13310 TCCTGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGGATTCGACTTCGAGTGTGATG 13369 Query 152070 GTTTTGCCCGT 152080 || ||||| || Sbjct 13370 GTCTTGCCGGT 13380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153816542401248