Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq82 120 2e-22 >seq82 Length=92890 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || ||||||||||| |||| ||| ||| | || || |||||||| || || ||| Sbjct 12986 TCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAG 13045 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | |||||| || |||| ||| | ||||||||| || ||||| ||| | | Sbjct 13046 ATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTG 13105 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | ||||||||||||| ||||| ||||| || || || ||||| ||| Sbjct 13106 TCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTCTTGCCAGTCAGAGTCTTGACG 13165 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 13166 AAAATTTGCAT 13176 Score = 105 bits (116), Expect = 5e-18 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | | ||| ||||| || ||| ||||||||||||||||| Sbjct 13461 TTGCATACCACCGCGCAGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTA 13520 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | || | ||| | || || |||||||| ||||| |||||||| |||||||| | Sbjct 13521 GTCGGACAAGGT-GCGACCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGT 13579 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGC 44280 ||| ||| | || ||||| ||| ||||| ||| || ||| | ||||| || | Sbjct 13580 CTGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGT--CGATGGTATCCGA 13637 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 || || ||||| | || || ||||| || |||| Sbjct 13638 AGACTCTACCTCGAGGGTGATGGTCTTGCCGGTGA 13672 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || || |||||||| || |||||| ||||||||||| Sbjct 13171 TTGCATACCACCACGCAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTA 13230 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || || |||| || |||||||| ||||| |||||||| || ||||| || Sbjct 13231 GTCCGACAGGGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTC 13290 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | |||||||| ||| |||||| ||| | | | ||||| || | ||| Sbjct 13291 AGGAGGAATGCCTTCCTTATCCTGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGGA 13350 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| || || | || || ||||| || || Sbjct 13351 TTCGACTTCGAGTGTGATGGTCTTGCCGGT 13380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989136433696