Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq82 165 2e-35 seq52 86.0 2e-11 >seq82 Length=92890 Score = 165 bits (182), Expect = 2e-35 Identities = 157/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || || || || ||||| ||||||||| || ||| Sbjct 13173 CAAATTTTCGTCAAGACTCTGACTGGCAAGACAATTACCCTGGAGGTGGAATCATCGGAC 13114 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||| ||||| ||||| || ||||| ||||| || Sbjct 13113 ACAATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAACAG 13054 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | ||||| |||| || ||| || Sbjct 13053 CGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAACATC 12994 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || |||||||| || || ||| Sbjct 12993 CAGAAAGAATCGACCCTCCAT 12973 Score = 147 bits (162), Expect = 5e-30 Identities = 147/188 (78%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || || || |||||||| || ||||| Sbjct 13672 TCACCGGCAAGACCATCACCCTCGAGGTAGAGTCTTCGGATACCATCGACAATGTCAAGA 13613 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| ||||| || || || |||||||| |||||||| || | ||||||||||||| Sbjct 13612 GCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCTTGATCTTCGCCGGAA 13553 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121 | |||||||||||||| | || |||| |||| || ||| ||||||| ||||| || || Sbjct 13552 AGCAGCTCGAAGATGGTCGCAC-CTTGTCCGACTACAACATCCAAAAGGAATCCACTCTC 13494 Query 178122 CATCTTGT 178129 || ||||| Sbjct 13493 CACCTTGT 13486 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| ||||| || ||| |||||| |||||||| |||||||| Sbjct 13380 ACCGGCAAGACCATCACACTCGAAGTCGAATCCTCAGATACCATCGACAACGTCAAGTCG 13321 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| ||||| || ||||| || ||||| ||||||||||| | |||||||||||||| Sbjct 13320 AAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAACGCTTGATCTTCGCCGGAAAG 13261 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||||||||| || | || || | || || ||| |||| || || || || || || Sbjct 13260 CAGCTCGAAGACGGCCGTACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTTCAC 13201 Query 178125 CTTGT 178129 ||||| Sbjct 13200 CTTGT 13196 >seq52 Length=336907 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || || || ||||| || || || || ||||| || || || Sbjct 188503 AAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTTGCTGGCAAG 188444 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| ||||| | ||||| |||| || ||| |||| || || || || || || Sbjct 188443 CAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCA- 188385 Query 178125 CTTG 178128 |||| Sbjct 188384 CTTG 188381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726758231872