Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20globosa_20[genbank_20GCA_5F001630435.1_202016-04-25] 24 sequences; 33,473,551 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq21 138 2e-27 seq23 104 5e-17 seq20 91.5 3e-13 >seq21 Length=3296855 Score = 138 bits (152), Expect = 2e-27 Identities = 269/397 (68%), Gaps = 18/397 (5%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || |||| ||| |||| || ||||| || ||||||||||| || || || || Sbjct 2752356 CTTCCACACATGCTCTTCTACGGCCCACCCGGTACCGGCAAGACGTCGACGATTCTCGCC 2752297 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 || ||| |||| ||| | ||||| | |||||||||||||| || || Sbjct 2752296 CTCGCCAAGGAGCTGTACGGCCCCGAATTCATGAAGGCCCGCGTGCTCGAGCTCAATGCC 2752237 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCA------AG 254174 || ||||| ||||| | | | | |||||||| ||| ||||| ||| || || Sbjct 2752236 TCCGACGAGCGCGGCATTGCCATTGTCCGCGAAAAGGTCAAGGACTTCGCCCGCATGCAG 2752177 Query 254175 ATGTCGATTTCGTCGT-----TCCAA--CCCGG-----CTGTCCGCCTTTCAAGCTCGTG 254222 || ||| | || || | ||| |||| ||| || ||||| |||||| | Sbjct 2752176 CTGACGAATCCGCCGCCGGGCTACAAGGCCCGCTACCCCTGCCCCCCTTTTAAGCTCATT 2752117 Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282 | || |||||||| || | |||||| ||||| ||| ||| || ||||| || ||| Sbjct 2752116 GTGCTCGACGAGGCCGATTCTATGACGCAGGACGCCCAGAGCGCGCTTCGCCGGACCATG 2752057 Query 254283 GAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATC 254342 ||||| || | | ||||| || |||||| | ||||||||||| || ||||| Sbjct 2752056 GAGACATACAGCAAGATTACGCGCTTCTGCCTGATTTGCAACTACGTCACGCGCATCATT 2751997 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 | ||||||||| |||||| |||||| || |||| Sbjct 2751996 GACCCGCTGGCCAGCCGGTGCAGCAAGTTCCGCTTCA 2751960 >seq23 Length=876449 Score = 104 bits (114), Expect = 5e-17 Identities = 204/296 (69%), Gaps = 18/296 (6%) Strand=Plus/Minus Query 254073 CTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGC 254132 ||| ||||||| | | ||| | ||| ||| ||||| ||||| ||||| |||||| ||| Sbjct 835763 CTGCTGGGCGACGCGTACAAG-GAG-GCG-GTGCTGGAGCTCAACGCCAGTGACGAGCGC 835707 Query 254133 GGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGTCGTTC 254192 || | |||||||| ||| || |||||| ||| | ||| | | | || | Sbjct 835706 GGCATCGACGTCGTGCGCAACCGCATCAAGGGCTTCGCGCAGAAGAAGGTCACGCTG--- 835650 Query 254193 CAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCC 254252 ||||| | || | |||||||||||||||||||||||| |||| ||||||| | Sbjct 835649 ----CCGGCGGGGCGGCA--CAAGCTCGTGATCCTGGACGAGGCCGACAGCATGACGTCG 835596 Query 254253 GACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGC 254312 | |||||| || || ||||| |||||||||| |||| |||||| ||| | Sbjct 835595 GGTGCGCAGCAGGCGCTGCGCCGGACGATGGAGATCTACTCGAACACGACGCGGTTTGCC 835536 Query 254313 CTGGTGTGCAACTACGTGTC---GAAGATCATCGCCCCGCTGGCTTCTCGGTGCGC 254365 | | ||||||| | ||| |||||||| | |||||| || |||||||| Sbjct 835535 TTTGCGTGCAACCA---GTCCAACAAGATCATTGAGCCGCTGCAGTCGCGGTGCGC 835483 >seq20 Length=3586167 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 254020 ACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGG 254079 |||| || ||||| || ||||||||||| ||||||||||||||||| || | | | Sbjct 1587595 ACGGACCGCCCGGCACGGGCAAGACGTCGACCATCCTGGCGCTGGCACGGCGGATCTATG 1587536 Query 254080 GCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGG 254139 ||| || || || | || ||||| ||||| ||||| || ||||| ||||| | | Sbjct 1587535 GCGCGGCCAATGTGCGGCAGATGGTGCTGGAGCTCAACGCGTCCGACGACCGCGGCATTG 1587476 Query 254140 ACGTCGTCCGCGACAAGATCAAGACTTT 254167 |||| || || || |||||||||| || Sbjct 1587475 ACGTGGTGCGGGAACAGATCAAGACGTT 1587448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766069816832