Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20globosa_20[genbank_20GCA_5F001630435.1_202016-04-25] 24 sequences; 33,473,551 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq19 116 4e-21 seq22 109 6e-19 seq1 98.7 1e-15 >seq19 Length=4558656 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| |||||| || || |||||||||| ||||| || | Sbjct 3387810 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCA 3387869 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || || || ||||||||||| | || | | ||||||| Sbjct 3387870 TCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTG 3387929 Query 42114 TCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| | || | |||| | | | |||||||| ||||| |||| || || Sbjct 3387930 TCC-TGAATCTTGCTCTTGACATTGTCAATAGTGTCGCTGCTCTCCACCTCGAGGGTAAT 3387988 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| |||||||| || ||||| || || || ||||| Sbjct 3387989 GGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 3388024 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | | ||||| ||||| || | || |||||| || || ||||| || | Sbjct 3387568 GACCGCCGCGCAGACGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 3387627 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 ||| || || |||| || |||||||| || || || || || ||||||||||| | | Sbjct 3387628 ACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCG 3387687 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | || |||||||||| ||| || || | ||| | | | |||||| ||| ||| Sbjct 3387688 GGATGCCCTCCTTGTCCTGGATCTTGGACTTCA-CGTTGTCAATGGTGTCGGACGACTCC 3387746 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || |||||||| || ||||| || ||||||||||| Sbjct 3387747 ACCTCCAGGGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3387796 Score = 105 bits (116), Expect = 7e-18 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||||||||||| || || ||||| || || || || |||| || ||||| Sbjct 3388277 ATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCTTCCAGCTG 3388336 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || ||||| || || ||||| ||||| | || | || |||||||||| ||| | | Sbjct 3388337 CTTGCCTGCGAAAATCAGGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCT 3388395 Query 42125 TTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 42182 | | |||| ||| | | | || || ||| || || || | |||||||| ||||| Sbjct 3388396 TGGACTTGA-CGTTGTCGATGGTATCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCG 3388454 Query 42183 GTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| |||||||| ||||| Sbjct 3388455 GTAAGGGTCTTCACAAAGATCTGCAT 3388480 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||| || | || |||||| || || ||||| || ||| || || | Sbjct 3388037 ACGCAACACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACC 3388096 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || || ||||| ||||| | || | || |||||| Sbjct 3388097 ATCCTCCAGCTGCTTGCCCGCGAAAATCAGACGCTGTTGGTCTGGGGGAATGCCCTCCTT 3388156 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || |||| ||| | | | ||||| || || || || | ||| | Sbjct 3388157 GTCCTGGATCTTGCTCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCCAACGTAA 3388215 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| || ||||| ||||| Sbjct 3388216 TGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 3388252 >seq22 Length=2936705 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| |||| ||||||||||| || || ||||| || | || || || || Sbjct 228252 CGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCG 228193 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || || || ||||| ||||| | || | || ||||||| Sbjct 228192 TCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTG 228133 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| | | | |||||| |||||| || | |||||| Sbjct 228132 TCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATG 228073 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||||||||| || ||||| || || || ||||| || Sbjct 228072 GTTTTGCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 228035 >seq1 Length=6771991 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| ||| ||||||||| || ||||| || | ||| || || |||| || Sbjct 3549081 CACCAGGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 3549140 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | |||||| || ||||| || || ||||||||||| | || | || |||||||||| Sbjct 3549141 CAACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 3549200 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || |||| | | | |||||| || || || || | |||||||| || Sbjct 3549201 GATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTT 3549260 Query 42179 GCCCGTTAGCGTCTTTACAAAG 42200 ||| || || ||||| || ||| Sbjct 3549261 GCCGGTAAGGGTCTTCACGAAG 3549282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212637036160