Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20globosa_20[genbank_20GCA_5F001630435.1_202016-04-25] 24 sequences; 33,473,551 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq19 141 2e-28 seq22 131 4e-25 seq2 104 6e-17 >seq19 Length=4558656 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| || || || || |||| ||||| |||| || || Sbjct 3387576 CGCAGACGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTA 3387635 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || ||||| || || || ||||| ||||| || || Sbjct 3387636 CGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCC 3387695 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| || |||||||| || | ||||| || | Sbjct 3387696 TCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGACGACTCCACCTCCAGG 3387755 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||| || || | ||| | |||||| Sbjct 3387756 GTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3387796 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || ||||| || || |||| |||||||| | | ||| Sbjct 3387803 ACGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGT 3387862 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||| || || || ||||| ||||| ||||| Sbjct 3387863 ACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATACC 3387922 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| ||| || || ||||| | | ||||| || | Sbjct 3387923 CTCCTTGTCCTGAATCTTGCTCTTGACATTGTCAATAGTGTCGCTGCTCTCCACCTCGAG 3387982 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||||| || || | ||| | ||||| Sbjct 3387983 GGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 3388024 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || |||||||| || || || || |||| ||||| ||| || || | ||||| || Sbjct 3388044 ACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCCTCC 3388103 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||| || ||||| || || || |||||||| || ||||| || |||||||| ||| Sbjct 3388104 AGCTGCTTGCCCGCGAAAATCAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 3388163 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||| || ||||||||||| |||| || || || ||||| || |||||| Sbjct 3388164 ATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAACGTAATGGTCTTG 3388223 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || | || || | ||| | ||||| Sbjct 3388224 CCAGTGAGGGTCTTGACGAAGATCTGCAT 3388252 >seq22 Length=2936705 Score = 131 bits (144), Expect = 4e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| ||||| || ||| || || |||| ||||| || | | || Sbjct 228259 ACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGT 228200 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| || || |||||||| ||||| || || Sbjct 228199 GCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCAGGCGGGATGCC 228140 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| ||| ||||||| || | Sbjct 228139 CTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCACCTCAAG 228080 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || |||||||| | || || | ||| | ||||| || Sbjct 228079 GGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 228035 >seq2 Length=26641 Score = 104 bits (114), Expect = 6e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625 ||| ||||| || || ||| || | |||||||||||| | |||||||| | | | ||||| Sbjct 19762 TATAATTACAGCTCACGCCATTTTAATGATTTTCTTTATGGTTATGCCTGCTTTAATAGG 19703 Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAG 7685 ||||| || |||| || | |||||| | | |||| || || ||||| || || || Sbjct 19702 AGGTTTTGGTAATTTTTTATTACCTTTATTAGTAGGTGGACCCGACATGGCATTCCCTAG 19643 Query 7686 GCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 | || ||||||||||||||||| |||| ||| |||| Sbjct 19642 ATTAAATAATATAAGTTTTTGATTGTTACCTCCTAGCTTA 19603 Score = 100 bits (110), Expect = 7e-16 Identities = 85/103 (83%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCTG 370730 || |||||||||||||||||||| | |||||| ||||| |||||||| ||||| || | Sbjct 19205 TCTGGATGACCAAAAAATCAGAAAAGATGTTGGAATAAA--ATAGGATCACCTCCTCCGG 19262 Query 370731 ATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 || ||||| || |||||||||||||||||| |||||||| Sbjct 19263 CTGTTTCAAAGAAAGAAGTATTAAAATTTCTATCTGTTAAAAC 19305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530833296656