Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20globosa_20[genbank_20GCA_5F001630445.1_202016-04-25] 19 sequences; 33,493,113 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq12 120 2e-22 seq14 109 4e-19 seq15 96.9 2e-15 >seq1 Length=9646222 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3727078 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3727019 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3727018 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3726984 >seq12 Length=5458371 Score = 120 bits (132), Expect = 2e-22 Identities = 209/304 (69%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 6183 CGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAG 6242 ||| |||| |||||| ||||| |||||||| ||| ||| ||| ||||| ||||| Sbjct 4553238 CGTGATGTCACGGACGTCTTCTATCGCTACAAGATGGAGCGTATCCAGACCAAGATCGAG 4553297 Query 6243 GGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTC 6302 || ||||| |||||||| || |||||| | ||| || | ||||| || ||| Sbjct 4553298 GGCAAGGGCAACGGTATCAAGACCGTCGTGCCGAACCTGAGCCAGGTCGCGCAGCAGCTG 4553357 Query 6303 GGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAG 6362 | ||||| | | |||||| | || || || || | || || ||||| ||||| | Sbjct 4553358 GCCCGCCCGGGCGCCTACCTTATCAAGTACTTTGGCTTTGAGCTCGGCGCCCAGACCAAC 4553417 Query 6363 TTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAG 6422 |||| | |||| |||| ||| | ||||| | || | | ||||| || ||| Sbjct 4553418 ATTGACCCGCCTGACGACCGCTGGATCATCAACGGCGCCCACGAGGCCGCCAAACTCCAG 4553477 Query 6423 GACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAG 6482 |||| || |||||||| || |||||||||||| || | | ||| | ||||| ||| Sbjct 4553478 GACTACCTCGACGGCTTCATCACCAAGTTTGTGCTCTGCAAGAAGTGCCAGAACCCCGAG 4553537 Query 6483 ACCG 6486 |||| Sbjct 4553538 ACCG 4553541 >seq14 Length=3247589 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || |||| ||||| || || ||| |||||| || || |||||||||| Sbjct 662523 TACCACCACGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAG 662582 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | || || || ||||| || ||||| || || || | | Sbjct 662583 AAAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCG 662642 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| ||| || ||| ||||| | | ||| || | || || | Sbjct 662643 GGATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCAATAGTGTCGCTGCTCTCCA 662702 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | ||||| || || ||||||| ||| || ||||| ||||||||| Sbjct 662703 CCTCGAGGGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATG 662752 >seq15 Length=2990856 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| |||| || || ||||||||||| || || ||||| || || Sbjct 2730177 ACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 2730236 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || |||| || | || || || ||||| || ||||| ||||| || | || Sbjct 2730237 AAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCAGGCGG 2730296 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| || || ||| ||||| | || || || ||||| || Sbjct 2730297 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCAC 2730356 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || ||||| ||||| | ||| || ||||| |||||||| || Sbjct 2730357 CTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 2730407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947122438789