Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20globosa_20[genbank_20GCA_5F001630445.1_202016-04-25] 19 sequences; 33,493,113 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12 311 9e-80 seq1 156 5e-33 >seq12 Length=5458371 Score = 311 bits (344), Expect = 9e-80 Identities = 534/773 (69%), Gaps = 4/773 (1%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || || | || ||| || ||| || ||||||| Sbjct 3728319 CCTCAGCACATGATCATGCGTGTGGCTGTCGGCATCTGGGGCGACAACATTGAGCGTGTC 3728378 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 |||||| ||| ||| ||| | | |||| ||| ||||| ||| |||| || || ||| Sbjct 3728379 ATTGAGACCTACAACTACATGTCCAACAAGTTCTTCACGCATGCCTCGCCGACGCTTTTC 3728438 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || || || | ||| |||| || ||||| || | || ||||| ||| Sbjct 3728439 AACGCCGGCACCCCGCAGGCCCAGCTGTCCTCGTGTTTCCTCGTCGACATCAAGGACGAC 3728498 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || ||||||||||| ||||||||| ||| ||| ||||||||| | | ||| Sbjct 3728499 AGCATTGAGGGCATCTACGACACGCTCAAGACGTGCGCCATGATCTCCAAGACGGCCGGT 3728558 Query 53420 GGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| || | || || | || |||| || | ||| | || || || | Sbjct 3728559 GGTATTGGCCTGAACG--TCCACCGCATCCGCGCCACGGGCTCCTACATTGCCGGCACTA 3728616 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||||| || | || ||| | || ||||| || || ||||||||||| ||||| || | Sbjct 3728617 ACGGCACGTCCAACGGCATCATTCCCATGCTGCGTGTGTTCAACAACACCGCCCGCTATG 3728676 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || ||||||| || |||||| || | ||| ||||||||||||||||||||||| Sbjct 3728677 TCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTCTGCATCTACCTCGAGCCGTGGCACG 3728736 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 |||| | | ||||| ||||| ||||| ||| || || | || ||| ||||| || Sbjct 3728737 GCGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGGTGCGCGCCC 3728796 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 | |||||||| || ||||||||||||||||| |||||| | ||| |||||| ||| Sbjct 3728797 GCGACCTGTTCCTGGCCCTGTGGATTCCGGACCTGTTCATGAAGCGGGTCGAGAAGAACG 3728856 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGG 53777 |||||| ||| |||||||| ||||||||||||||||| || |||||| |||| Sbjct 3728857 GCGAGTGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCGGACTGCTACGGCGAGG 3728916 Query 53778 AGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837 ||||| | | |||| || ||||| ||||||| | |||| ||||||| Sbjct 3728917 AGTTTGAGGCCCTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCTCAAGACCGTCAAGG 3728976 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 | | || | ||| |||| || ||| || |||| ||||| || | || | |||| Sbjct 3728977 CCCAGAAGCTGTGGTATGCCATTCTCGAGGCCCAGACCGAGACCGGCAACCCCTTCATGC 3729036 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 |||||||| |||| ||||||||||| |||||| | ||| |||| Sbjct 3729037 TGTACAAGGACCACTGCAACCGCAAGAGCAACCAAAAGAACCTGGGCACCATC 3729089 Score = 134 bits (148), Expect = 2e-26 Identities = 310/454 (68%), Gaps = 25/454 (6%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| ||||| |||| || ||||| || ||||||||| | ||||| |||||||| Sbjct 3729603 CGCAACAGTCTGCTGATGGCACCGATGCCGACGGCGTCGACGTCGCAGATTCTGGGCAAC 3729662 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| |||||| |||||||||||| |||||| || || || ||| Sbjct 3729663 AACGAGTGCTTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTGGCTGGCGAG 3729722 Query 55604 TT---TGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660 || ||| || ||| | || ||||||||||| | || |||| Sbjct 3729723 TTCCAGGTCGTG---AACCCGTGGCTGCTCAAGGACCTGGTCGACATGGGTCTGTGGTCG 3729779 Query 55661 CCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCG-TCCAGA--ATCTGGAGA 55715 | || |||| || || | ||| || ||| ||| || |||||| ||| | Sbjct 3729780 GACAACATGAAGAACCGCATCAT-TGCCGA--GGGTGGTTCGATCCAGAACATCCCTAAC 3729836 Query 55716 TTCCTCTGC--GTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG---AAGAG 55770 ||| |||| ||||| | | ||| ||||||||||||||| | ||| | || Sbjct 3729837 ATCC-CTGCCGAAACCAAGGCGCTGTACAAGACGGTGTGGGAGATCTCGCAGCGCACGAT 3729895 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 | || | ||| || || ||||| |||| ||| |||||||| ||||| || ||||| Sbjct 3729896 TGTG---CAGATGGCGGCCGACCGTGGCGCGTTCATTGACCAGTCGCAGTCACTCAACAT 3729952 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGG-TGGAAGA 55889 | |||| | || | ||| |||| | | | |||||| |||||||| |||||| Sbjct 3729953 CCACATGCGTGAGCCGACGATGGGCAAGATCACCAGCATGCAC-TTTACGGGCTGGAAGC 3730011 Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| ||||||||||| |||||||| ||||| || Sbjct 3730012 TGGGTCTCAAGACGGGCATGTACTACCTGCGCAC 3730045 >seq1 Length=9646222 Score = 156 bits (172), Expect = 5e-33 Identities = 221/307 (72%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 ||||| |||||||||||||||| ||| |||||||| |||||||| |||||| | |||| Sbjct 5535345 AGGCGCGTGAAAATGTAACGAGCGCTGGCAGCATCAGAGCCACCAGAAAGACGAGAACCG 5535286 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | ||||| ||||| | ||| | |||||||| || |||||| |||| |||| | Sbjct 5535285 AAGTTACCACTGGGCTCGAGACAGTTGACGTTGTTGGAACCAACAAAGGTTTGCGCCAGG 5535226 Query 117419 TTGACAATCGTACCTTGGA--GGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 ||||||||| || | | || | ||||| ||||| |||| | | ||| | | Sbjct 5535225 CCGACAATCGTCTGATGCAACGACTGG--TCACCGTGGTGGTACGAGGCCAGCTTGGAGA 5535168 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGC 117534 | ||| || |||| | ||||||| ||| |||||| ||||||||||| |||| Sbjct 5535167 CCGTGCCAGCGAGCTCAAACACCTTCTGGTCCTTGACGT--AGTTCTTCTTGAAACAGGT 5535110 Query 117535 ATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTT 117594 ||| || ||||||||||| | ||||| | ||| || || ||||| |||||| | Sbjct 5535109 ATAGATGACCTTGCGCTGGCCAGGCTTGAAACCGTCAAGAACAGACGGGATGGAACGCAT 5535050 Query 117595 GATGTCC 117601 | ||||| Sbjct 5535049 GTTGTCC 5535043 Score = 113 bits (124), Expect = 5e-20 Identities = 302/455 (66%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || ||||||||||| |||| ||| ||||||| || ||||| | Sbjct 5535492 CCAGTACCAATACCGTCGGCACCGTTGACGAGAACCATGGGCACAACCGGCGCGTAGTTC 5535433 Query 151936 TCCGGCTCCACC-TGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994 | ||||| | || | || ||||||| || | || || | | || ||| Sbjct 5535432 TTGGGCTCAATAATGCTTCCC-TCATCCACGTTGTTCTCCAGGACAGGCTCATCCATCGG 5535374 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 ||| | || || | | ||| || |||||||| ||||| || | |||||| || Sbjct 5535373 GCTGAAGACACGGCGGGCGAAGGGAGACAGGCGCGTGAAAATGTAACGAGCGCTGGCAGC 5535314 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||| |||||| | || || | || || | ||| ||||||||| ||||| ||| Sbjct 5535313 ATCAGAGCCACCAGAAAGACGAGAACCGAAGTTACCACTGGGCTCGAGACAGTTGACGTT 5535254 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCA--GACTCGCTTCA 152172 ||||| || || || | || |||| |||||||| |||| |||| | ||| Sbjct 5535253 GTTGGAACCAACAAAGGTTTGCGCCAGGCCGACAATCGTCTGATGCAACGACTGG--TCA 5535196 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||||||| |||| | | ||| | || || || | || ||||||| |||| Sbjct 5535195 CCGTGGTGGTACGAGGCCAGCTTGGAGACCGTGCCAGCGAGCTCAAACACCTTCTGGTCC 5535136 Query 152233 GT--CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 | ||| ||||||||||| ||||| || || |||||||||||| || || |||| Sbjct 5535135 TTGACGTA--GTTCTTCTTGAAACAGGTATAGATGACCTTGCGCTGGCCAGGCTTGAAAC 5535078 Query 152291 CGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 |||| | || || || |||||| || ||||| Sbjct 5535077 CGTCAAGAACAGACGGGATGGAACGCATGTTGTCC 5535043 Score = 104 bits (114), Expect = 3e-17 Identities = 238/353 (67%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 152758 ACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTC 152817 || || || | ||||| || |||||||||||| || ||||| ||||| |||| | Sbjct 5534604 ACTTGCAAGAAGTTGATGAGCAAGCCCTTGATATGACTGCCGTCGTGATCCTGATCGGCC 5534545 Query 152818 ATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGAC-CCGTAGACCTTTCCATGTTG 152876 |||||||| || |||| ||||| | | | | | ||| | ||||||| || | Sbjct 5534544 ATGATCATGAGGTGACCATAGCGGA-GACCCTTGGTGTCGGTATAGACCTGCTTGTGCTT 5534486 Query 152877 AAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGT 152936 || || |||| || |||| ||| || ||||| || | ||| | ||| | | | Sbjct 5534485 CAGACCAAGGAACTGCTTGATGTTCTGAATTTCCTTGTTCTTGGTGATCTGGTCGATTGA 5534426 Query 152937 GGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCC 152996 ||||| || || ||| || |||| || ||||| || ||||| |||| || | | | Sbjct 5534425 AGCATCGCGCACGTTGAGCAGCTTACCGCGGAGCGGGAACACACCGATGCGGTCGGGATC 5534366 Query 152997 TACAA-CGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAA 153055 | || ||| | |||| |||| ||| | | || ||||||||||| |||| ||| | Sbjct 5534365 GAGAACCGCAC-GACCAGCAACAGCTAAACCACGAGCAGAGTCACCCTCTGTGAGAATGA 5534307 Query 153056 GCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTG 153108 |||| || ||||| | | || || ||| |||||||||| |||||||| Sbjct 5534306 GCGTGCACTCGTGGCCGTGCTTTGTGCCAGCCAAGTTGGCGTCAACAAGCTTG 5534254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215870036200