Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq16 233 2e-56 seq67 154 2e-32 seq86 145 8e-30 seq390 132 5e-26 >seq16 Length=123879 Score = 233 bits (258), Expect = 2e-56 Identities = 223/285 (78%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| ||||||||||||| ||||||| | || ||| Sbjct 3551 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATTGATCTG 3610 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| ||||||| |||||||| | || || | Sbjct 3611 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGAGGACGAGCGCTACTTTGTCTCG 3670 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | ||||| || ||||||||| ||||||||||||||||||||| || |||||||| Sbjct 3671 CACATCCTGGCTTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTCGTCGAGCGC 3730 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||||| ||||||| || |||||||||||||| |||||| ||| Sbjct 3731 TTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATG 3790 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || ||| |||||||||||| ||| Sbjct 3791 GAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTAC 3835 Score = 230 bits (254), Expect = 2e-55 Identities = 324/450 (72%), Gaps = 4/450 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGC-AGAGAGGCCGCCTTCGGCGAGCGC 117040 |||||||||| ||||| |||||||||||| ||| | ||| || || |||| | | |||| Sbjct 3952 AGAAGGCCGACTGGGCTCTGCGCTGGATCACCGACGAGA-AGTCCACCTTTGCCCAGCGT 4010 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || || ||||| ||||||||||| ||||||| |||||| ||| || |||| || Sbjct 4011 CTCGTTGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGCGCCTTCTCCTCCATCTTC 4070 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| ||||| || |||||||||||||| ||| ||||||||||||||| | Sbjct 4071 TGGCTCAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGT 4130 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 |||||||| ||||| |||||||||||| |||| ||| || || | || || Sbjct 4131 GACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCCCACCTGAACAACCGCCCC 4190 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | | | ||| || || ||| || ||| ||||||||| |||||| Sbjct 4191 AGCAAGCAGGTCATTGAGGACATTATCGTCGATGCCGTCAAGATCGAGCAGGAGTTCCTC 4250 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 ||||| || ||||| |||| ||||| || | || | | ||| ||| ||||| Sbjct 4251 ACCGAGGCCCTGCC-CTGCGCCCTGCTCGGCATGAACTCCACCCTCATGAAGCAGTACAT 4309 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||||| ||| | ||||| ||| || | | || |||| |||| | | | Sbjct 4310 TGAGTTCGTCGCTGACCGCCTGCTCGTCGCCCTCGGCAACGACAAGGTCTACCGCGCCAC 4369 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC 117429 |||||| | ||||| ||| | |||||| Sbjct 4370 CAACCCCTTCGACTTCATGGAGAACATCTC 4399 >seq67 Length=72276 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| |||||||||||| | || || ||| | Sbjct 66010 AAGATGCAGATTTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTTGAGGTGGAAAGC 65951 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| ||||||||||| | ||| Sbjct 65950 TCCGACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 65891 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || ||||| ||||| || |||| |||||||| ||||||| Sbjct 65890 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 65831 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| ||| ||||| || || ||||| || | || || Sbjct 65830 AACATCCAGAAGGAGAGCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGG 65781 >seq86 Length=56920 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||||||||| ||||| ||| | || ||||| | || Sbjct 129 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACCATTACCCTTGAAGTCGAGAGCTCC 188 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || || | ||||| ||||||||||| | ||||| Sbjct 189 GACACCATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 247 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | || ||||| |||||| || Sbjct 248 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGGACCCTGTCCGACTATAA 307 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| |||| || || || || |||| || | |||||| Sbjct 308 CATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTGCGTGGCGGC 356 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 40790 AGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGC 40849 |||||||||| | |||||||| || || |||| || ||||| ||||| || || | | Sbjct 1 AGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCC 60 Query 40850 GCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGA 40909 |||| || |||||||||||||||||||||| | ||||| || || ||| ||||| || Sbjct 61 GCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTGCGCCTGC 120 Query 40910 GGGGCGG 40916 | || || Sbjct 121 GTGGTGG 127 >seq390 Length=196699 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || || ||||| ||||||||| | || ||||| || | |||| | Sbjct 27584 TTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACGATC 27525 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| || || Sbjct 27524 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTG 27465 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| ||||| |||||||| || | |||||||| |||||||||||||||||| Sbjct 27464 ATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAG 27405 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| | || ||||| || ||| | ||| || | || || Sbjct 27404 GAGTCGACCCTGCACCTGGTGCTCCGCCTGCGCGGTGG 27367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216417816320