Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq86 116 3e-21 seq67 116 3e-21 seq390 109 5e-19 seq211 87.8 2e-12 >seq86 Length=56920 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || |||||||| || ||| || || || ||| || Sbjct 337 ACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGGGTCCGGCCATCTTCC 278 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || |||||||||||||| Sbjct 277 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 218 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||||||||| || | ||| | || ||| Sbjct 217 ATCTTCGACTTGACGTTGTCAATGGTGTCGGAGCTCTCGACTTCAAGGGTAATGGTCTTG 158 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 157 CCCGTGAGCGTCTTGACGAAAATCTGCAT 129 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||| ||||| || ||||| || || |||||||| ||| Sbjct 129 TACCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 70 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| |||||||||||| || ||||| |||| || |||||||| ||||| | Sbjct 69 ACAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCG 10 Query 118630 GTATGCCCT 118638 | ||||||| Sbjct 9 GGATGCCCT 1 >seq67 Length=72276 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||| || ||||| ||||||||||| || ||||| | Sbjct 65816 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 65875 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || |||||||| ||||| || |||||||||||||| || || || || | Sbjct 65876 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 65935 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||| | ||| || ||||| | ||| | ||||| || || || || || || Sbjct 65936 GTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGAC 65995 Query 118727 AAAAATCTGCAT 118738 ||||||||||| Sbjct 65996 GAAAATCTGCAT 66007 >seq390 Length=196699 Score = 109 bits (120), Expect = 5e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||||| ||| | || ||||| || || |||||||| || Sbjct 27365 TACCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 27424 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| |||||| ||||| || |||||| | || || |||||||| || || | Sbjct 27425 ACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCTGGGG 27484 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| ||||||| | ||||| Sbjct 27485 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGA 27544 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 |||| | ||| | || |||||||| || || || || || Sbjct 27545 CCTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAA 27584 >seq211 Length=310440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 133219 ACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGA 133278 || |||| || || || ||||||||||| || || || | | || | || |||||| Sbjct 28935 ACGGGTTCACGACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAGATGTTGGACGTGT 28994 Query 133279 ACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACG 133338 | || ||||| | ||||||||||| || ||||||| |||| ||||||||||||| | Sbjct 28995 AGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTCGACGCCGTGGGCATGGGAG 29054 Query 133339 CCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGT 133398 ||| || || | ||| | | |||| || || || ||| | | ||| ||||| Sbjct 29055 CCATCAGCAGACTGTTGCGGATACCGTGCTCCTTGATCTTGAGACGGAGGGCGTCCCAGT 29114 Query 133399 CCCACAGA 133406 |||| ||| Sbjct 29115 CCCAGAGA 29122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828115882944