Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq390 138 7e-28 seq67 132 3e-26 seq86 111 1e-19 >seq390 Length=196699 Score = 138 bits (152), Expect = 7e-28 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||| ||| Sbjct 27367 CCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 27426 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| |||||||| || ||||||||||| ||| Sbjct 27427 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCTGGGGGG 27486 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | |||| || | || ||||| Sbjct 27487 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 27546 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 |||| |||||||| |||||||| || || ||||| ||| Sbjct 27547 TCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAG 27585 >seq67 Length=72276 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||||||| | || || || ||||| ||||||||||||||| Sbjct 65781 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 65840 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| || || || || |||||||||||| || Sbjct 65841 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 65900 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | |||| ||| || Sbjct 65901 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCACC 65960 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||||| || ||||| || || || || ||||||||| Sbjct 65961 TCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATC 66008 >seq86 Length=56920 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||| |||||||| | || || ||||| ||||| ||||||||| Sbjct 355 CCGCCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 296 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| ||||||||| || || || || ||||||||||| | |||| Sbjct 295 AGGGTCCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 236 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | || | |||| ||||| Sbjct 235 -ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAGCTCTCGAC 177 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| ||||| ||||| || || || || |||||||| Sbjct 176 TTCAAGGGTAATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||||||| Sbjct 127 CCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 68 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 ||| ||| | || || | ||||||||| || || || || |||||||||||| Sbjct 67 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCG 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070299025920