Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq211 565 2e-156 seq16 158 1e-33 seq86 116 3e-21 seq67 107 2e-18 seq390 91.5 1e-13 >seq211 Length=310440 Score = 565 bits (626), Expect = 2e-156 Identities = 1262/1881 (67%), Gaps = 32/1881 (2%) Strand=Plus/Plus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 || || || ||||| |||| | || || | | ||||| || || |||||||||||| Sbjct 28595 TCAACAGTGAACTGGATGGGCTGGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 28654 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAG 22228 || ||||||| |||||| || || || || || | || || ||||| Sbjct 28655 TTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATGGTCGGCTCA 28714 Query 22229 TCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATA 22288 ||||| | |||| |||||| ||| ||||||||||| || || ||||||||||| Sbjct 28715 CGCATGTGGATGTTGAGCGACTGCGACTGGTCGATAAACGCACCACGGTCGGCGGCCATC 28774 Query 22289 TTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAAC 22348 | | | ||| || ||| || ||||| || ||||||||||| | || |||| Sbjct 28775 TGCACAATTGTGCGTTGCGAGATCTCCCACACAGTCTTGTACAGAGCCTTGGTCTCAGCG 28834 Query 22349 GGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTA 22408 || || ||| |||||| || ||| | | ||||| || || || | Sbjct 28835 GGGATGTTAGGGATGTTCTGGATCGAACCGCCCTCGGCAATGATGCGGTTCTTCATGTTG 28894 Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 || ||||| || ||| || || || |||| ||| ||||||| || || ||| Sbjct 28895 TCCGACCACAGGCCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTCACGACCTGGAAC 28954 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 ||||||| || || ||||| ||||| |||||||| ||| | || ||||| | || ||| Sbjct 28955 TCGCCGGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTAGGGCTCGAAGCACTCGTTG 29014 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| | |||||| || || ||||| || |||| ||| || ||| | Sbjct 29015 TTGCCCAGAATCTGCGAGGTCGACGCCGTGGGCATGGGAGCCATCAGCAGACTGTTGCGG 29074 Query 22589 AAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCG 22646 | ||||||| |||| || | || || ||||||||| ||| | |||||| Sbjct 29075 ATACCGTGCTCCTTGATCTTGAGACGGAGGGCGTC--CCAGTCCCAGAGACCAGACGGCT 29132 Query 22647 TCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGCCTTCGTA 22704 | |||| ||||||| ||| | |||| | ||| ||||| || |||||||| ||||| Sbjct 29133 TGACAT---CCCACATGTCGAACTGCAGGATGCCCTGCGACACG--GGGCTGCCCTCGTA 29187 Query 22705 CGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATA 22764 || ||| | || | ||| |||| || || | ||| || ||| ||| || Sbjct 29188 CGACGAGTAGGTGCCCTCAATCTCGGCCAGGTCCGACGACGCAGTCAGGGCGGCGTGGTA 29247 Query 22765 TATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTACGGCA 22820 || ||||||||||| | |||||| | ||| ||| |||||| ||| | |||| Sbjct 29248 GATGGTCTCGAAGATCTGCTTGTTGAGCTCGCGGGCCTCGGGCGAC----TCGAAGGGCA 29303 Query 22821 TACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT 22880 | |||| || ||| || || |||| |||||| || || | ||| || || |||| Sbjct 29304 TGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACCAATGGGGCGGTGGC 29363 Query 22881 TCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCA 22940 || || || |||||||||| || || | || |||||| | | ||||| Sbjct 29364 GCATGTTGCTGTTCTTGGCCTCGGGCACGGGGTAGAAGTTGACATCGATGATGCGGTTCA 29423 Query 22941 AGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT- 22999 ||| | | |||| | || | | ||||| || || | || | Sbjct 29424 GGTTGCGGACAACAACCTGGGTGACCTCGTGCAGCTTCTTGAAGTCATAGAC-CTCGTTG 29482 Query 23000 -TGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 |||| | |||||| | ||| | ||| || || ||||| ||||| ||||| || Sbjct 29483 GTGTAGTCGACAAACGACGGCAGGGCCAGCGAAGCCAGGTTGCAGACGGCGACCTCATCA 29542 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 || || |||||| ||||| || || || || ||| | || ||||||| || Sbjct 29543 GGGGCCGAGTACTCGACAATCTCCGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTC 29602 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 |||||||||| || || ||||| |||||||| |||||| | || |||| |||||| Sbjct 29603 TTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCG 29662 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGC-ACGTACCT 23235 ||| | ||||| ||| || ||||| |||| || | ||| ||| | | | Sbjct 29663 GTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGGGCCTTAACG-GTCTTGATGCCGCG 29721 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 ||| || | ||||||||||| ||||| || || || ||| ||||||| ||||| ||||| Sbjct 29722 GCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAG 29781 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTC 23353 ||| || | | | || |||||||| ||||| | | | || || || || || || Sbjct 29782 GCCAGGGCACTCGTTAGGGCACATGAGCGTCCAC-TCGCCATTC-TTCTCGACACGCTTC 29839 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 || || || || || ||||| || || |||||| ||||||||||| |||||||| ||| Sbjct 29840 ATGAACAGGTCAGGAATCCACAGGGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTG 29899 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 ||| |||||| || ||| | || || || ||||| || ||||||||||||||||| Sbjct 29900 CCGTGGTTCTTGCGCAGATCGAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAG 29959 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | || || || || | ||| ||||| ||||| || ||||| || || ||||| ||| Sbjct 29960 ATACAGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTATTG 30019 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA 23593 |||| | ||||| || | || |||||||||| |||| ||| || | ||| Sbjct 30020 AACACACGCAGCATGGGGATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTACGAG 30079 Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 || | || || | | ||| |||| || || || || ||| ||| || || ||||| Sbjct 30080 CCCGTCGCACGGATGCGGTGGACGTTGAGGCCGATACCGCCGGCCGTCTTGGAGATCATG 30139 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713 ||||| || || ||||||||||||||||| |||||||| || ||| | |||| | | Sbjct 30140 GCGCACGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGAGG 30199 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 || ||||| |||| || || | |||||| |||| ||| || || || |||||| Sbjct 30200 AAGCACGAGGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGTGG 30259 Query 23774 GTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 || ||| | || ||||| ||| ||||| || || ||| | ||||||| || || Sbjct 30260 GTGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAATGACACGTTCAATGTTATCGCC 30318 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT 23892 || |||| ||||| ||||| ||||||| || || | |||||| | ||||| Sbjct 30319 CCAGATGCCGACAGCGACACGCATGATCATGTGCTGGGGACGCTCGACGATCTTGCCGTC 30378 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 | |||| |||||| ||||| | | || || || ||||| || | ||||| ||||| Sbjct 30379 GAGCTTGAGCAGATAGGAACGCTCGAGGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTC 30438 Query 23953 ACGATCGTGCACTATGGCCGA 23973 || |||| || |||||||| Sbjct 30439 GCGGTCGTAGACAATGGCCGA 30459 >seq16 Length=123879 Score = 158 bits (174), Expect = 1e-33 Identities = 299/438 (68%), Gaps = 4/438 (1%) Strand=Plus/Plus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| || ||| || | || | || ||||| |||||||| ||||| ||||| |||||| Sbjct 3994 CCACCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGCG 4053 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||| | | || || ||| | ||||| ||||| ||||||||||||||||| || || Sbjct 4054 CCTTCTCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCCA 4113 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| | || ||||| |||||||| || || || || ||||| ||||| | | ||| | Sbjct 4114 ACGAGCTCATCTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCCC 4173 Query 58138 ACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGA 58197 || | ||| || | | | ||| |||||||||| ||| || ||| || Sbjct 4174 ACCTGAACAACCGCCCCAGCAAGCAGGTCATTGAGGACATTATCGTCGATGCCGTCAAGA 4233 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 |||| | ||||| ||||||| ||||| || ||| ||||||| |||||| Sbjct 4234 TCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACTCCACCC 4293 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGA 58315 | ||| ||||||||||||| || || ||| | || | ||| || | || | Sbjct 4294 TCATGAAGCAGTACATTGAGTTCGTCGCTGACCGCCTGCTCGTCGCCCTCGGCAACGACA 4353 Query 58316 GCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAA 58375 ||| ||| | | | || || || || || ||| | |||||||||| ||||| Sbjct 4354 AGGTC--TACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAA 4411 Query 58376 GACAAACTTTTTCGAAAA 58393 ||| ||||| ||||| || Sbjct 4412 GACCAACTTCTTCGAGAA 4429 >seq86 Length=56920 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| || || ||| | || || || ||| Sbjct 129 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACCATTACCCTTGAAGTCGAGAGCTCC 188 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| ||| | ||||| |||||| Sbjct 189 GACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 248 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || |||||||| ||| ||||||| ||| || ||| |||||| Sbjct 249 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGGACCCTGTCCGACTATAAC 308 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || ||||| || | ||| | ||||| Sbjct 309 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTGCGTGGCGG 355 >seq67 Length=72276 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || ||||| |||||| | || || ||| Sbjct 66010 AAGATGCAGATTTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTTGAGGTGGAAAGC 65951 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| || || ||||||||| ||| | ||||||||| Sbjct 65950 TCCGACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 65891 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || || |||||||| ||| | || ||| Sbjct 65890 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGAC 65852 >seq390 Length=196699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| | || || || | || |||| || Sbjct 27584 TTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACGATC 27525 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||| ||| | || || ||||||||||| || Sbjct 27524 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTG 27465 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||||||||| ||| |||| || || || || || ||||| || || Sbjct 27464 ATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAG 27405 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || ||||| || | ||| | || |||| Sbjct 27404 GAGTCGACCCTGCACCTGGTGCTCCGCCTGCGCGGTGGTA 27365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763992861440