Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq211 134 2e-26 >seq211 Length=310440 Score = 134 bits (148), Expect = 2e-26 Identities = 450/689 (65%), Gaps = 20/689 (3%) Strand=Plus/Plus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | || ||||| | || |||||| || | | || || || ||||| Sbjct 29783 CCAGGGCACTCGTTAGGGCACATGAGCGTCCACTCGCCATTCTTCTCGACACGCTTCATG 29842 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || || ||||||||||| || || | || | ||| | || | ||||| || || Sbjct 29843 AACAGGTCAGGAATCCACAGGGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCG 29902 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||| |||||||||||| | | | || |||||||| || | ||| || Sbjct 29903 TGGTTCTTGCGCAGATCGAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGAT- 29961 Query 66192 GCCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 || || | ||||| || ||||| || ||||| || | ||| | ||| |||||||| Sbjct 29962 -ACAGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTATTGA 30020 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 | || | || ||| || || || || ||||| || || ||||| |||| || || | Sbjct 30021 ACACACGCAGCATGGGGATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTACGAGC 30080 Query 66310 CACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 | | ||||| || | ||| || || || || || ||| | || ||||| | Sbjct 30081 CCGTCGCACGGATGCGGTGGACGTTG--AGGCCGATACCGCCGGCCGTCTTGGAGATCAT 30138 Query 66368 TGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426 ||||| ||| || | ||| || ||||||||||| || || || ||| | |||| | | Sbjct 30139 GGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGA 30197 Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 | || || |||| ||| | || || || || || | || || || |||| Sbjct 30198 GGAAGCACGAGGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGT 30257 Query 66487 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTA---TATC- 66541 | || || | || | || | |||| ||||| |||||||| | || | |||| Sbjct 30258 GGGTGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAATGACACGTTCAATGTTATCG 30316 Query 66542 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 66601 || |||| || || ||||||||||| | ||||||||| || | || |||||||| Sbjct 30317 CCCCAGATG----CCGACAGCGACACGCATGATCATGTGCTGGGGACGCTCGACGATCTT 30372 Query 66602 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 66661 | || | || | || ||||| || | || || |||||||| || | ||| Sbjct 30373 GCCGTCGAGCTTGAGCAGATAGGAACGCTCGAGGGTCTTGAAACCAAAGTACTGGTAGTT 30432 Query 66662 AAAGTCTCGTTCGTAAATAATAACCGAGT 66690 ||||| || ||||| | ||| |||||| Sbjct 30433 GAAGTCGCGGTCGTAGACAATGGCCGAGT 30461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169245866880