Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq23 140 3e-28 >seq23 Length=113490 Score = 140 bits (154), Expect = 3e-28 Identities = 277/403 (69%), Gaps = 14/403 (3%) Strand=Plus/Minus Query 21110 CACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 |||||||||||| | |||| | ||| || || || || |||| | | ||||||| | Sbjct 14254 CACGTAAAACTG-CGCAAACATGTGGCACGGCGGCAGCACCATTTGGGGGAGGTCCCGCG 14196 Query 21169 GGTTCCACGCGCACATAACGATGCGCCGATCGTGGGG--CCGCCTGTTAATTAGATCCAC 21226 |||||||||| ||| | ||||| || || ||| | ||| | | || | | || Sbjct 14195 GGTTCCACGCCGACAGCAAAATGCGGCGGTCAAAGGGTGCTTCCT-TCAGTTTGCGC-AC 14138 Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTC 21286 || | ||||||||||| ||||| |||||||||| ||||| | || ||||||| Sbjct 14137 AACCTCGGCGAGCTGGTCCACGCCCTGGCCCTCGTAGTCGGCGTGTGGGTCCTTGTACTC 14078 Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTC 21346 || |||||||| | ||||||||| ||||| || || || || ||||| || |||||| Sbjct 14077 GGCACCAAAATGGCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCGTCTTCGCGGTC 14018 Query 21347 CCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCC 21406 ||||||| | | | |||||||| || |||| ||||||| || || ||||| Sbjct 14017 AGTGAAGCCCATCTGATCGAGGAAGGCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCC 13958 Query 21407 ----GCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCT 21462 ||||| || ||| ||| ||| ||| | ||| |||||||| | ||| | Sbjct 13957 CTTTTCGGCG----AGCGTGGTCGAGGTGGTCTCGCCGCGGATGAACCACAGGAGCTCTT 13902 Query 21463 CCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGG 21505 | | |||| | | | ||| |||| ||||| || | |||||| Sbjct 13901 CGATGACGGCGCGCGTAAAGACCCGCTTGGTTGTCAGCAGAGG 13859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427773747759360