Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq211 156 6e-33 seq16 87.8 3e-12 >seq211 Length=310440 Score = 156 bits (172), Expect = 6e-33 Identities = 455/689 (66%), Gaps = 20/689 (3%) Strand=Plus/Plus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||||| || |||| ||| ||||| | || |||||| |||| | || || || ||||| Sbjct 29783 CCAGGGCACTCGTTAGGGCACATGAGCGTCCACTCGCCATTCTTCTCGACACGCTTCATG 29842 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || || ||||||||||| || || | || ||||| | || | |||||| || || Sbjct 29843 AACAGGTCAGGAATCCACAGGGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCG 29902 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| |||||||||||| | | | || | |||||||| || | ||| || Sbjct 29903 TGGTTCTTGCGCAGATCGAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGAT- 29961 Query 80071 GCCATAA--CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128 || || | || || || ||||| || ||||| || | ||| | ||| |||||||| Sbjct 29962 -ACAGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTATTGA 30020 Query 80129 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 80188 | || | || ||| || || || || ||||| || || ||||| |||| || || | Sbjct 30021 ACACACGCAGCATGGGGATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTACGAGC 30080 Query 80189 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 | | ||||| || | ||| || || || || || ||| | || ||||| | Sbjct 30081 CCGTCGCACGGATGCGGTGGACGTTG--AGGCCGATACCGCCGGCCGTCTTGGAGATCAT 30138 Query 80247 TGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305 ||||| ||| || | ||| || ||||||||||| ||||| || || | |||| | | Sbjct 30139 GGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGA 30197 Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 | || || |||| ||| | || || || || || | || || || |||| Sbjct 30198 GGAAGCACGAGGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGT 30257 Query 80366 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTA---TATC- 80420 | || || | || | |||| |||| ||||| |||||||| | ||| | |||| Sbjct 30258 GGGTGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAATGACACGTTCAATGTTATCG 30316 Query 80421 CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 80480 || |||| || || ||||||||||| | ||||||||| || | || |||||||| Sbjct 30317 CCCCAGATG----CCGACAGCGACACGCATGATCATGTGCTGGGGACGCTCGACGATCTT 30372 Query 80481 GTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 80540 | | | || | || || || || | || || |||||||| || | ||| Sbjct 30373 GCCGTCGAGCTTGAGCAGATAGGAACGCTCGAGGGTCTTGAAACCAAAGTACTGGTAGTT 30432 Query 80541 AAAGTCTCGTTCGTAAATAATAACCGAGT 80569 ||||| || ||||| | ||| |||||| Sbjct 30433 GAAGTCGCGGTCGTAGACAATGGCCGAGT 30461 >seq16 Length=123879 Score = 87.8 bits (96), Expect = 3e-12 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| |||||| |||||||| | || || |||||||| || || || Sbjct 4159 CAGGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGG 4100 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||| | || | || || |||||| Sbjct 4099 CCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGAGAAGGCGCCCGAGAAGAAG 4040 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT--GT- 50136 || || || || || || || ||||| || | || || | ||| | || | || Sbjct 4039 ATACCCTCGACGGCAGCGAAAGCAACGAGACGCTGGGCAAAGGTGGACTTCTCGTCGGTG 3980 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 ||||| ||||||| ||||||||||| Sbjct 3979 ATCCAGCGCAGAGCCCAGTCGGCCTTCTT 3951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264921348480