Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq211 140 4e-28 >seq211 Length=310440 Score = 140 bits (154), Expect = 4e-28 Identities = 450/687 (66%), Gaps = 20/687 (3%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||| | | |||||| |||| | | || || ||||| Sbjct 29783 CCAGGGCACTCGTTAGGGCACATGAGCGTCCACTCGCCATTCTTCTCGACACGCTTCATG 29842 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || || ||||||||||| || || | || ||||| | || | |||||| || || Sbjct 29843 AACAGGTCAGGAATCCACAGGGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCG 29902 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| |||||||||||| | | | || | |||||||| || | ||| || Sbjct 29903 TGGTTCTTGCGCAGATCGAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGAT- 29961 Query 72154 GCCATAA--CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 || || | || || || ||||| || ||||| || | ||| | ||| |||||||| Sbjct 29962 -ACAGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTATTGA 30020 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | || | || ||| || || || || ||||| | || ||||| |||| || || | Sbjct 30021 ACACACGCAGCATGGGGATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTACGAGC 30080 Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | | ||||| || || ||| || || || || || ||| | || ||||| | Sbjct 30081 CCGTCGCACGGATGCGGTGGACGTTG--AGGCCGATACCGCCGGCCGTCTTGGAGATCAT 30138 Query 72330 TGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 72388 ||||| ||| || | ||| || ||||||||||| || || || ||| | |||| | | Sbjct 30139 GGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGA 30197 Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 | || || |||| ||| | || || || || || | || || || |||| Sbjct 30198 GGAAGCACGAGGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGT 30257 Query 72449 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTA---TATC- 72503 | || || | || | |||| |||| ||||| |||||||| | ||| | |||| Sbjct 30258 GGGTGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAATGACACGTTCAATGTTATCG 30316 Query 72504 CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTT 72563 || |||| || || ||||||||||| | ||| ||||| || | || |||||||| Sbjct 30317 CCCCAGATG----CCGACAGCGACACGCATGATCATGTGCTGGGGACGCTCGACGATCTT 30372 Query 72564 GTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 72623 | | | || | || ||||| || | || || |||||||| || | ||| Sbjct 30373 GCCGTCGAGCTTGAGCAGATAGGAACGCTCGAGGGTCTTGAAACCAAAGTACTGGTAGTT 30432 Query 72624 AAAGTCTCGTTCGTAAATAATAACCGA 72650 ||||| || ||||| | ||| |||| Sbjct 30433 GAAGTCGCGGTCGTAGACAATGGCCGA 30459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135575848320