Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq16 168 1e-36 seq211 161 1e-34 >seq16 Length=123879 Score = 168 bits (186), Expect = 1e-36 Identities = 351/518 (68%), Gaps = 25/518 (5%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || ||||| | |||| | || |||||| ||||| ||||| | | ||| Sbjct 3945 ATTCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATCACCGACGAGAAGTCCACCTTTGCC 4004 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | || || || ||||| ||||| ||||| |||||||| ||||| || | || Sbjct 4005 CAGCGTCTCGTTGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGCGCCTTCTCCTCC 4064 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||||||||||||||| || |||||||| ||||| | |||||| | || Sbjct 4065 ATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATC 4124 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGC 125598 || || ||||||||||| ||| ||||||||| || || || || || || | | | Sbjct 4125 TCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCCCACCTGAACAAC 4184 Query 125599 GTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT---CAACATTGTAACCGATGCCGTGA 125655 ||| || | ||| ||||||| ||||| | ||||||||| | Sbjct 4185 CGCCCCAG-------CAAGC-------AGGTCATTGAGGACATTATCGTCGATGCCGTCA 4230 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA 125715 ||| || || ||||| || ||||| |||| || | | || | |||||||||| || Sbjct 4231 AGATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACTCCA 4290 Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC- 125774 || ||| ||||||| ||||| || || || || || || || | ||| Sbjct 4291 CCCTCATGAAGCAGTACATTGAGTTCGTCGCTGACCGCCTGCT---CGTCGCCCTCGGCA 4347 Query 125775 -CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGG 125832 || |||| | ||| ||||| || ||||| || |||||| | ||| || || | | Sbjct 4348 ACGACAAGGTCTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCG 4407 Query 125833 GTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | ||||||||||| ||||||||| ||| |||||||| Sbjct 4408 GCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 4445 Score = 143 bits (158), Expect = 4e-29 Identities = 212/296 (72%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 125013 CATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTC 125072 ||| | || ||| |||||||||| ||||| ||||||| || ||||| | ||| ||| | Sbjct 3545 CATCAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATT 3604 Query 125073 GATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT 125132 |||||||||||||| ||| |||| ||| | | || ||| || ||||| | ||| Sbjct 3605 GATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGAGGACGAGCGCTACTTT 3664 Query 125133 ATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTT 125191 | |||||||| |||| ||||| |||| |||||| || ||||||||||| || || || Sbjct 3665 GTCTCGCACATCCTGGCTTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTCGTC 3724 Query 125192 GACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAA 125249 || || ||| ||| | ||| | || |||| ||||| ||||| ||||| Sbjct 3725 GA-GCGCTTCAGCGGCGAG--GTCCAGGTCCCCGAGGCCCGCTGCTTCTACGGCTTCCAG 3781 Query 125250 ATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||||| |||||| | ||||| || | ||||| || || |||| ||||| Sbjct 3782 ATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTACAT 3837 >seq211 Length=310440 Score = 161 bits (178), Expect = 1e-34 Identities = 650/995 (65%), Gaps = 28/995 (3%) Strand=Plus/Minus Query 96398 CTTGGACTCGGCCATTGTAGACGATCGCGATTTTCAATCTTTGACC--TATTTTGCATAC 96455 ||| |||||||||||||| |||| ||||| || ||| || ||| || |||| | | Sbjct 30466 CTTTGACTCGGCCATTGTCTACGACCGCGACTT-CAA-CT---ACCAGTACTTTGGTTTC 30412 Query 96456 AAGACGCTAGAGCGTACCTATCTGATAAAGCTGGCCGACGGTAAGATTTGTGAACGAGTG 96515 ||||| || |||||| |||||||| | ||||| |||||| ||||| || || Sbjct 30411 AAGACCCTCGAGCGTTCCTATCTGCTCAAGCT---CGACGGCAAGATCGTCGAGCGTCCC 30355 Query 96516 CAGCACATGTACATGAGGACCGCGCTCGGTATTCACGGTCGGGAT-ATTGAATCGGTAAT 96574 ||||||||| |||| | ||| |||| || | || || | |||||| || || Sbjct 30354 CAGCACATGATCATGCGTGTCGCTGTCGGCAT-CTGGGGCGATAACATTGAACGTGTCAT 30296 Query 96575 CGAAACGTACAATCTAC-TCTCGAACCGCTACTATGTACATTCGACGCCTACTCTGTGTC 96633 || || ||||| |||| | || ||| | || || | |||| || || | Sbjct 30295 TGAGACCTACAA-CTACATGTCCAACAAGTTCTTCACCCACGCCTCGCCCACGCTTTTCA 30237 Query 96634 ATGCGGCAACGAATC-GTTCCAACTATGCCTCTTGCTATCTGCTCGAACTCAAAGAGGAC 96692 | || | ||| | | ||| || | |||| |||| || |||| |||| || ||| Sbjct 30236 ACGCCGGCACGCCCCAGGCCCAGCTGT-CCTCGTGCTTCCTCGTCGACATCAAGGACGAC 30178 Query 96693 AGCATCGGTGGCGTTATGGACACGCTAAAGGACGCG-GCCACCATTTCAAAACACTGT-G 96750 ||||| | ||| | |||||||| ||| ||| | |||| || || || || | | Sbjct 30177 AGCATTGAGGGCATCTACGACACGCTCAAG-ACGTGCGCCATGATCTCCAAG-ACGGCCG 30120 Query 96751 GCGGTGTAGGTTTGCATGTGCACAAGTTGCGCTGTAAAAACTC-TACGATTCATTCAACA 96809 ||||| | || | | || ||| | || | ||| ||| | | || || Sbjct 30119 GCGGTATCGGCCTCAACGTCCACCGCATCCGTGCGACGGGCTCGTACATTGCCGGCACCA 30060 Query 96810 AACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATA 96868 | ||||| ||| ||| | | || ||||| | ||| |||| || || | || || Sbjct 30059 A-CGGCACGTCCAACGGCATCATCCCCATGCTGCGTGTGTTCAATAACACTG-CTCGCTA 30002 Query 96869 CGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCA 96928 |||| ||||| ||||| || || || || || | ||||| | || || ||||| Sbjct 30001 CGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCTGTATCTACCTCGAGCCGTGGCA 29942 Query 96929 CGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGC 96988 ||| ||||| || || || |||| ||||||| ||| ||| || |||| || || Sbjct 29941 CGCCGACGTCTTCGAGTTCCTCGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 29882 Query 96989 CAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGG 97048 | | || |||| || || ||| | || || ||||||||||||| ||| | | Sbjct 29881 CCGCGATCTGTTCCTGGCCCTGTGGATTCCTGACCTGTTCATGAAGCGTGTCGAGAAGAA 29822 Query 97049 TGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGA 97108 |||| | |||| || |||||||| || || || || ||| | || |||| || || Sbjct 29821 TGGCGAGTGGACGCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACGGTGA 29762 Query 97109 AGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGT-GAGACGAGTCG 97167 ||||| ||||| |||| |||||| | |||||||| | | |||| || Sbjct 29761 CGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCCGCGGCATCAAGAC-CGTTA 29703 Query 97168 ATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTAC 97226 | || | |||| |||||| | |||||| | ||| ||| ||||| || | || | | Sbjct 29702 AGGC-CCAGAAGCTGTGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACCCCTTC 29644 Query 97227 ATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAG 97286 || || |||||||| | || ||||| |||||||| || ||||||||||| Sbjct 29643 ATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGC 29584 Query 97287 GGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 ||||||| ||||||||||| ||||| |||||| | | || || ||| || || ||| Sbjct 29583 AGCTCCAACCTGTGCACGGAGATTGTCGAGTACTCGGCCCCTGATGAGGTCGCCGTCTGC 29524 Query 97347 GTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 ||||| ||| | ||||| |||||| || Sbjct 29523 AACCTGGCTTCGCTGGCCCTGCCGTCGTTTGTCGA 29489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055198280320