Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq430 89.7 8e-14 seq125 82.4 1e-11 >seq430 Length=135585 Score = 89.7 bits (98), Expect = 8e-14 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| |||||| || ||||| || || ||||||||||| || || Sbjct 33442 GCCAAGCGCCACCGGAAGAT-TCTTCGCGACAACATTCAGGGCATCACCAAGCCTGCCAT 33500 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| |||||||| |||||||| || ||||||||| | |||| Sbjct 33501 CCGCCGTCTGGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 33541 Score = 86.0 bits (94), Expect = 1e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| | ||| |||||| || || |||| ||| | Sbjct 33604 TGATCTACGAGGAGACCCGCGGTGTTCTCAAGTCCTTCCTTGAGGGTGTCATCCGTGACG 33663 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || |||||||| || || ||||||||||| || | ||| ||||||| | Sbjct 33664 CCGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACGTCGCTCGATGTCGTCTACG 33723 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | |||| || || ||||||| | || ||||| || ||||| | ||| Sbjct 33724 CTCTGAAGCGCCAGGGCCGTACCCTGTACGGTTTCGGCGGTTAAACATCT 33773 >seq125 Length=37221 Score = 82.4 bits (90), Expect = 1e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 16583 GTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 ||||| | |||||| || || || || ||||| ||||| |||||||||||||| ||| | Sbjct 741 GTTATTCGCGATGCTGTTACA-TACACGGAGCATGCTAAGCGTAAGACTGTCACGTCCTT 683 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 |||| | || ||||| | || || |||||||| | | || |||||||| ||||| | Sbjct 682 GGATGTGGTTTATGCGCTAAAGCGGCAAGGCCGCACCTTGTACGGTTTTGGTGGTTAAGC 623 Query 16702 TT 16703 || Sbjct 622 TT 621 Score = 80.6 bits (88), Expect = 4e-11 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| ||| || || ||||| || || || || ||||| ||||| Sbjct 944 GCCAAGCGCCACCGGAAGAT-TCTCCGTGACAACATTCAGGGCATTACTAAGCCCGCTAT 886 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| || ||||||||||| || |||||| |||||| Sbjct 885 CCGCCGTCTCGCGCGTCGTGGTGGCGTGAAGCGTATCTCTG 845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074805019376