Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq211 138 1e-27 >seq211 Length=310440 Score = 138 bits (152), Expect = 1e-27 Identities = 451/689 (65%), Gaps = 20/689 (3%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | || |||||| || | | || || || ||||| Sbjct 29783 CCAGGGCACTCGTTAGGGCACATGAGCGTCCACTCGCCATTCTTCTCGACACGCTTCATG 29842 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || || ||||||||||| || || | || ||||| | || | ||||| || || Sbjct 29843 AACAGGTCAGGAATCCACAGGGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCG 29902 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| |||||||||||| | | | || | |||||||| || | ||| || Sbjct 29903 TGGTTCTTGCGCAGATCGAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGAT- 29961 Query 63348 GCCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63405 || || | ||||| || ||||| || ||||| || | ||| | ||| |||||||| Sbjct 29962 -ACAGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTATTGA 30020 Query 63406 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTC 63465 | || | || ||| || || || ||||| || | || ||||| |||| || || | Sbjct 30021 ACACACGCAGCATGGGGATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTACGAGC 30080 Query 63466 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 | | ||||| || | ||| || || || || || ||| | || ||||| | Sbjct 30081 CCGTCGCACGGATGCGGTGGACGTTG--AGGCCGATACCGCCGGCCGTCTTGGAGATCAT 30138 Query 63524 TGCGCATCGT-TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTA 63582 ||||| ||| || | |||||| ||||| ||||| ||||| || || | |||| | | Sbjct 30139 GGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGA 30197 Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 | || || |||| ||| | || || || || || | || || || |||| Sbjct 30198 GGAAGCACGAGGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGT 30257 Query 63643 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTA---TATC- 63697 | || || | || | || | |||| ||||| |||||||| | || | |||| Sbjct 30258 GGGTGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAATGACACGTTCAATGTTATCG 30316 Query 63698 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63757 || |||| || || ||||||||||| | ||||||||| || | || |||||||| Sbjct 30317 CCCCAGATG----CCGACAGCGACACGCATGATCATGTGCTGGGGACGCTCGACGATCTT 30372 Query 63758 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63817 | || | || | || ||||| || | || || |||||||| || | ||| Sbjct 30373 GCCGTCGAGCTTGAGCAGATAGGAACGCTCGAGGGTCTTGAAACCAAAGTACTGGTAGTT 30432 Query 63818 AAAGTCTCGTTCGTAAATAATAACCGAGT 63846 ||||| || ||||| | ||| |||||| Sbjct 30433 GAAGTCGCGGTCGTAGACAATGGCCGAGT 30461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943836085120