Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq211 251 7e-62 seq16 132 5e-26 seq86 127 2e-24 seq67 125 7e-24 seq390 123 2e-23 >seq211 Length=310440 Score = 251 bits (278), Expect = 7e-62 Identities = 946/1452 (65%), Gaps = 59/1452 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || |||||||| ||||||||||||| |||||| ||| || | ||| |||||| |||| Sbjct 28940 TTCACGACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTAGGGC 28999 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||||||| || || | ||||| || ||||||||| |||| | Sbjct 29000 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTCGACGCCGTGGGCATGGGAGCCATC 29059 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTT----CCTTTAGCGTACCCCAA 145231 | | | || ||||| | ||||||| ||||| |||| | |||| |||| Sbjct 29060 AGCAGACTG--TTGCGGATACCGTGCTCCTTGA--TCTTGAGACGGAGGGCGT--CCCAG 29113 Query 145232 TCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCG 145291 ||||| || || |||| | || |||||||||||| |||||| ||||||| || Sbjct 29114 TCCCAGAGACCAGACGGCTTGACATCCCACATGTCGAACTGCAGGATGCCCTGCGACACG 29173 Query 145292 GGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCC 145351 |||||||| | | || ||| ||||| | | | ||| || || | ||| | Sbjct 29174 GGGCTGCCCTCGTACGACGAGTAGGTGCCCTCAATCTCGGCCAGGTCCGACGACGCAGTC 29233 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGC-TTCATCG-- 145408 || ||| || || || |||||| || ||| |||||||| |||| | ||| Sbjct 29234 AGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGC----TCGCGGGCCTCGGG 29289 Query 145409 -CTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 |||| | ||||||||||| | || ||||| || || ||||| | || || || Sbjct 29290 CGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACC 29349 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACG 145524 ||||| || || ||||||||| || | || |||| | || || || Sbjct 29350 AATGGGGCGGTGGCGCATGTTGCTGTTCTTGGC---CTCGGGCACGGGGTAGAAGTTGAC 29406 Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAA 145584 ||||| || |||| ||| || || || |||| || | | ||| ||| | || Sbjct 29407 ATCGATGATGCGGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGCAGCTTCTTGAA 29466 Query 145585 GTCAAACCGAGCCTCGT---CAACGACCACACAGCTATTG-ACGGCGATCGACGCCAAAT 145640 |||| | || |||||| | | ||| | | | | | ||| | ||| |||| | Sbjct 29467 GTCATA--GA-CCTCGTTGGTGTAGTCGACA-AACGACGGCAGGGCCAGCGAAGCCAGGT 29522 Query 145641 TACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 | || || || ||| || | | | ||| | || ||||| | ||||| ||| | Sbjct 29523 TGCAGACGGCGACCTCATCAGGGGCCGAGTACTCGACAATCTCCGTGCACAGGTTGGAGC 29582 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 |||||| ||||| || | ||| || || || | |||||| ||||||||| |||| Sbjct 29583 TGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCA 29642 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGC 145818 || | || ||| ||||| ||| | ||| | ||| || || || | ||| || Sbjct 29643 TGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGAT--GGCGTACCACAGCTTCTGGGC 29700 Query 145819 ----ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 ||| | || ||| ||||||||| | ||||| || ||| || |||| | Sbjct 29701 CTTAACGGTCTTGATGC----CGCGGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGA 29756 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 || || ||||||||| || | |||||| || |||| ||| || ||||| |||| ||| Sbjct 29757 ACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGCGTCCACT 29816 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 |||| || | ||| |||| ||| |||| || || | |||||| || | || | Sbjct 29817 CGCCATTCTTCTCGACACGCTTCATGAACAGGTCAGGAATCCACAGGGCCAGGAACAGAT 29876 Query 145995 CGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGAT 146052 |||| || | ||||| || ||| | || || || || | ||| ||| Sbjct 29877 CGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGC-GCAGATCGAGGA-ACTCGAAGAC 29934 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTG 146109 ||| ||||||||||| || | |||| || ||| || || ||||||||||| Sbjct 29935 GTCGGCGTGCCACGGCTCGAGGTAGATACAGAAGGCACCAGGACGCTTGTTGCCACCCTG 29994 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTAC 146169 ||| |||| || | |||| || || || |||| |||||| || |||| ||| Sbjct 29995 GTCAACGTAGCGAGCAGTGTTATTGAACACACGCAGCATGGGGATGATGCCGTTGGACGT 30054 Query 146170 GCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAG 146229 |||||| || | || | ||| | || | || || || || | ||||| Sbjct 30055 GCCGTTGGTGCCGGCAATGTACGAGCCCGTCGCACGGATGCGGTGGACGTTGAGGCCGAT 30114 Query 146230 ACCGCC-GCCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCA 146287 |||||| ||||| |||||| || |||||| ||| |||||| ||||||||||| ||| Sbjct 30115 ACCGCCGGCCGT-CTTGGAGATCATGGCGCACGTC-TTGAGCGTGTCGTAGATGCCCTCA 30172 Query 146288 ATGCTATCG-CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCC 146346 ||||| ||| | | | ||| ||| || ||||||||| ||| ||| ||| ||||| || Sbjct 30173 ATGCTGTCGTCCTTG-ATGTCGACGAGGAAGCACGAGGACAGCTGGGCCTGGGGCGTGCC 30231 Query 146347 CGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGT 146406 || ||| | ||| || ||||| || || | || | ||| || || Sbjct 30232 GGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGAACTTGTTGGACATGTAGTTGTAGGT 30291 Query 146407 TTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTG 146466 || || | || ||||| ||||| ||||| | |||||| ||||||| |||||| Sbjct 30292 CTCAATGACACGTTCAATGTTATCGCCCCAGATGCCGACAGCGACACGCATGATCATGTG 30351 Query 146467 TTGGGGCCGCTC 146478 ||||| ||||| Sbjct 30352 CTGGGGACGCTC 30363 >seq16 Length=123879 Score = 132 bits (146), Expect = 5e-26 Identities = 348/519 (67%), Gaps = 23/519 (4%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | |||||||| |||||||||| || ||||||| | | | | || Sbjct 3939 CCCTGCATTCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATCACCGACGAGAAGTCCACC 3998 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 || ||| ||||| | || || || || || ||||| |||| || || ||| || Sbjct 3999 TTTGCCCAGCGTCTCGTTGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGCGCCTTC 4058 Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 || ||||||| | |||| || | || | | |||||||||||||| || |||||| Sbjct 4059 TCCTCCATCTTCTGGCTCAAGAAGCGCGGTC-TGATGCCCGGCCTGACCTTCTCCAACGA 4117 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 ||| || ||||| |||||||||||||| || |||||||| || || || | | | Sbjct 4118 GCTCATCTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCT---TCTCCCA 4174 Query 46326 CGTGCACGACAAGCTTGCGCCCGA-CA--CCGTGC--TGAG--CATGTTCAAGGAGGCGG 46378 | || || || ||||| | || | | | |||| ||| || || || | Sbjct 4175 CCTGAACAAC-------CGCCCCAGCAAGCAGGTCATTGAGGACATTATCGTCGATGCCG 4227 Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC- 46437 | || ||| ||||||| | || | || |||||| |||||||| ||||||||| Sbjct 4228 TCAAGATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACT 4287 Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497 ||| || ||| | ||||| ||||| || || ||||| |||||||| | | || Sbjct 4288 CCACCCTC-ATGAAGCAGTACATTGAGTTCGTCGCTGACCGCCTGCTCGT-CGCCCTCGG 4345 Query 46498 CAGC-CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556 || | ||| | | ||| ||| || || || || ||| | |||||||| || | Sbjct 4346 CAACGACAAGGTCTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGG 4405 Query 46557 GGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| || || || ||||| ||||||||||||||||| Sbjct 4406 CGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 4444 >seq86 Length=56920 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||| || | || | ||| |||||||| |||||||| || ||| Sbjct 356 GCCGCCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 297 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || || || ||||||||||| || |||| | ||||||||||| || || Sbjct 296 CAGGGTCCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGG 237 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||||| | || | || |||| | ||||| Sbjct 236 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAGCTCTCGAC 177 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || |||||||||||||| Sbjct 176 TTCAAGGGTAATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||||||||||| || |||||||| ||| | Sbjct 127 CCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 68 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 67 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 8 Query 131128 ATTCC 131132 || || Sbjct 7 ATGCC 3 >seq67 Length=72276 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||| || |||||||| ||| | Sbjct 65781 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 65840 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 65841 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 65900 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || |||| | || | Sbjct 65901 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCACC 65960 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||||||| || || || || |||||||||||||| Sbjct 65961 TCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 66007 >seq390 Length=196699 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || ||||| | || | |||||||||||| || |||||||| || | Sbjct 27367 CCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 27426 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 27427 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCTGGGGGG 27486 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||||| Sbjct 27487 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 27546 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAA 131225 || | ||| | ||| || ||||| || || || ||||| Sbjct 27547 TCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAA 27584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010251130880