Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq185 140 2e-28 seq222 125 5e-24 seq67 105 4e-18 >seq185 Length=8727 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6778 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6719 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6718 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6684 >seq222 Length=662048 Score = 125 bits (138), Expect = 5e-24 Identities = 203/292 (70%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 |||| |||||||||||||| ||| ||||||| ||||| ||||||| ||||| ||| Sbjct 56088 GACGTCTTCTACCGCTACAAGATGGAGCGCATCCAGACCAAGATCGAGGGCAAGGGCAAC 56029 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 ||||| || ||||| | |||| || | || ||| || ||| | || |||| | Sbjct 56028 GGTATCAAGACCGTTGTCCCCAACCTGAGCCAGGTTGCTCAGCAGCTGGCCCGTCCTGGC 55969 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 |||| | | || || || || | ||| || ||||| ||||| | |||||| Sbjct 55968 GCCTATCTTATCAAGTACTTTGGCTTCGAGCTCGGCGCCCAGACCAACATTGATCCTCCC 55909 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 | || |||| ||| | ||||| | || | | |||||||| ||||||| || ||| Sbjct 55908 GATGACCGCTGGATCATCAACGGTGCCCACGAGGCCGCCAAGCTCCAGGACTACCTCGAC 55849 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 ||||| || |||||||||||| || | | ||| | ||||| ||||||| Sbjct 55848 GGCTTCATCTCCAAGTTTGTGCTCTGCAAGAAGTGCAAGAACCCCGAGACCG 55797 >seq67 Length=72276 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| |||| || || ||||||||||| || || ||||| || || Sbjct 65780 ACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 65839 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || |||| || | || || || ||||| || ||||| || || |||| || Sbjct 65840 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGG 65899 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| || || ||| ||||| | || || || ||||| || Sbjct 65900 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCAC 65959 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || ||||||||||| | ||| || ||||| |||||||| || Sbjct 65960 CTCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 66010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945436502992