Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq211 143 3e-29 >seq211 Length=310440 Score = 143 bits (158), Expect = 3e-29 Identities = 455/694 (66%), Gaps = 20/694 (3%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | || ||||| | || |||||| || | | || || || | Sbjct 29778 CCAGGCCAGGGCACTCGTTAGGGCACATGAGCGTCCACTCGCCATTCTTCTCGACACGCT 29837 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| || || ||||||||||| || || | || ||||| | || | ||||| | Sbjct 29838 TCATGAACAGGTCAGGAATCCACAGGGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCT 29897 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||| |||||||||||| | | | || | |||||||| || | || Sbjct 29898 TGCCGTGGTTCTTGCGCAGATCGAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGT 29957 Query 63198 ATATGGCCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255 | || || || | ||||| || ||||| || ||||| || | ||| | ||| ||||| Sbjct 29958 AGAT--ACAGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTT 30015 Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 ||| | || | || ||| || || || || ||||| || || ||||| || | || || Sbjct 30016 ATTGAACACACGCAGCATGGGGATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTA 30075 Query 63316 GCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373 || | ||||| || | ||| || || || || || ||| | || ||| Sbjct 30076 CGAGCCCGTCGCACGGATGCGGTGGACGTTG--AGGCCGATACCGCCGGCCGTCTTGGAG 30133 Query 63374 ATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 63432 || | ||||| ||| || | ||| || ||||||||||| || || || ||| | |||| Sbjct 30134 ATCATGGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTC 30192 Query 63433 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492 | || || || |||| ||| | || || || || || | || || || Sbjct 30193 GACGAGGAAGCACGAGGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGA 30252 Query 63493 AGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTA--- 63548 ||||| || || | || | || | |||| ||||| |||||||| | || | Sbjct 30253 GGCGTGGGTGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAATGACACGTTCAATGT 30311 Query 63549 TATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63607 |||| || |||| || || ||||||||||| | ||||||||| || | || ||| Sbjct 30312 TATCGCCCCAGATG----CCGACAGCGACACGCATGATCATGTGCTGGGGACGCTCGACG 30367 Query 63608 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63667 |||||| || | || | || ||||| || | || || |||||||| || | | Sbjct 30368 ATCTTGCCGTCGAGCTTGAGCAGATAGGAACGCTCGAGGGTCTTGAAACCAAAGTACTGG 30427 Query 63668 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 || ||||| || ||||| | ||| |||||| Sbjct 30428 TAGTTGAAGTCGCGGTCGTAGACAATGGCCGAGT 30461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628578387200