Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq16 129 1e-24 seq189 116 8e-21 seq11 89.7 1e-12 seq409 86.0 1e-11 seq404 86.0 1e-11 seq388 86.0 1e-11 seq69 86.0 1e-11 >seq16 Length=123879 Score = 129 bits (142), Expect = 1e-24 Identities = 272/402 (68%), Gaps = 8/402 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 4426 TCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 4367 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||| |||| | ||| || || |||| | |||||| || || ||||| | Sbjct 4366 GCGCGGTAGACCTTGTCGTTGCCGAGGGCGACGAGCAGGCGGTCAGCGACGAACTCAATG 4307 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || ||||||||||| | || || || | ||||| || | Sbjct 4306 TACTGCTTCATGAGGGTGGAGTTCATGCCGAGCAGGGCGCAGGGCAGGGCCTCGGTGAGG 4247 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| ||| | || || || | | ||| ||| | ||||| | | | | Sbjct 4246 AACTCCTGCTCGATCTTGACGGCATCGACGATAATGTCCTCAATGACCTGCTTGCTGGGG 4187 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | |||||| || | ||| | || || | |||| | |||||| |||||||| Sbjct 4186 CGG-TTGTTC---AGGTGGGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTC 4131 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||| ||||||||| | |||||| ||||||| || || ||| ||||||| Sbjct 4130 ACGCGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGACCGCGCTTCTTGAGCCA 4071 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| | | | |||| || ||||| | | ||||||||| Sbjct 4070 GAAGATGGAGGAGAAGGCGCCCGAGAAGAAGATACCCTCGAC 4029 >seq189 Length=324415 Score = 116 bits (128), Expect = 8e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| ||||||||||| || |||| ||||||||||| ||| Sbjct 103510 GGTGAGGACCTGTGCAACTGCACGTTCTCGCTCGCCTACGGTGCCAAGATTCTGCTTAAC 103451 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | | ||||||||| | || || ||||| ||||||||| || | Sbjct 103450 CAGACCCACCTGCGCCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCC 103391 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | || || || || || ||| Sbjct 103390 GGCAAGTCCACCCTGATGCGCGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 103332 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| |||| || ||||||||| | |||||| Sbjct 103331 GAGCGAGGTCAAGACCGTGTTCGTCGAGCACGACCTGGACTCC 103289 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 336 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 277 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 276 CCCGCATCGGGC 265 >seq11 Length=127203 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||||||||||||||||||||||||||| || | || ||||| || | Sbjct 124090 GTCGGCTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCGCTGGCGCGTGCCATGCTGCAA 124149 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| ||||| |||| || || || || || ||| ||||| | ||| | || Sbjct 124150 AAGGCCGACGTCCTGTTGCTGGACGAACCTACGAATCACTTGGACGTCGAGAACATTGCA 124209 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | ||| ||||| Sbjct 124210 TGGCTCGAGTCGTACCT 124226 >seq409 Length=161894 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 20729 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 20670 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 20669 CCCGCATCGGGC 20658 >seq404 Length=166691 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 120485 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 120426 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 120425 CCCGCATCGGGC 120414 >seq388 Length=582526 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 141563 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 141622 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 141623 CCCGCATCGGGC 141634 >seq69 Length=71976 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 55873 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 55814 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 55813 CCCGCATCGGGC 55802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831110923312