Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq86 167 4e-36 seq67 167 4e-36 seq16 167 4e-36 seq189 132 9e-26 seq11 107 4e-18 >seq86 Length=56920 Score = 167 bits (184), Expect = 4e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || || || |||| |||| ||| || |||||||| || || ||||||| Sbjct 363 TTTACTGGCCGCCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTAT 304 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | ||||| || |||| |||||||| | |||||| || || || || || | || |||| Sbjct 303 AGTCGGACAGGGTCCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 244 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || ||||| |||||||| || ||||| | ||||||| || |||||||| | Sbjct 243 CAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAGC 184 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| | ||| ||||| || |||||||| ||||||||||| |||||||| Sbjct 183 TCTCGACTTCAAGGGTAATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129 >seq67 Length=72276 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || ||| ||| || |||||||| || ||||| Sbjct 65781 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 65840 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || |||||||| || Sbjct 65841 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 65900 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | ||| || Sbjct 65901 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCACC 65960 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| |||||||||||||||||||| |||||||| Sbjct 65961 TCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 66007 >seq16 Length=123879 Score = 167 bits (184), Expect = 4e-36 Identities = 323/471 (69%), Gaps = 8/471 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || |||||||||||||| || || |||||||||||||| |||||| | Sbjct 4463 CATGACACCGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 4404 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||| || ||| |||||||||||| |||||||| ||||| | |||| || || Sbjct 4403 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTAGACCTTGTCGTTGCC 4344 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || || | ||||||||| |||||||| |||||||| |||| ||| ||||| Sbjct 4343 GAGGGCGACGAGCAGGCGGTCAGCGACGAACTCAATGTACTGCTTCATGAGGGTGGAGTT 4284 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || | |||||| | ||| ||| | ||| |||| ||| | ||| || Sbjct 4283 CATGCCGAGCAGGGCGCAGGGCAGGGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGC 4224 Query 10175 TTCCTCGACGATG--CTC-TTTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || ||| ||| ||| | ||| | | ||| | | |||||| || | || Sbjct 4223 ATCGACGATAATGTCCTCAATGACCTGCTTGCTGGGGC-GGTTGTTC---AGGTGGGAGA 4168 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 | || || |||| | ||| ||||||||||| || ||||| ||||||||| | Sbjct 4167 AGAGCAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGGAGA 4108 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | ||| |||||||| || || || || |||||||| |||| | |||| | || | Sbjct 4107 AGGTCAGGCCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGAGAAGGCGCCCG 4048 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 |||| | | |||||| ||| | | || ||||| |||| || |||| Sbjct 4047 AGAAGAAGATACCCTCGACGGCAGCGAAAGCAACGAGACGCTGGGCAAAGG 3997 Score = 86.0 bits (94), Expect = 1e-11 Identities = 120/168 (71%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682 |||||||| | || ||||| ||| | | || ||||| | ||||||||| || ||| Sbjct 3720 AGGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAGAAAGCCAGGATGTGCGAGACAAAG 3661 Query 10683 TGGCGCTCATCATCGTTCAG----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTG 10738 | |||||| || |||||||| || ||| ||||| || ||||| | || | Sbjct 3660 TAGCGCTCGTCCTCGTTCAGGCGGTTGTTC----CAGTCGTGCAGATCCTTGGACAGATC 3605 Query 10739 GACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 | |||||| |||||||||| | ||| |||||||||||||||| || Sbjct 3604 AATCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACATTTG 3557 >seq189 Length=324415 Score = 132 bits (146), Expect = 9e-26 Identities = 670/1045 (64%), Gaps = 56/1045 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| |||||| Sbjct 102501 CGCCACTGGATGTACTCCGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 102560 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | || ||| || Sbjct 102561 TGCTGCTTGATGTAGGCAATACGGATGTTCTCGTGCTGGTAGATCTCACCGGCAGTGGGG 102620 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || ||||| || |||| || || | |||||| ||||| ||||||||||| Sbjct 102621 ATCAGCTCACCAGTGAGCACGTTGACCAGGGTCGACTTGCCGGCACCGTTGGGGCCAATG 102680 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAA---GATCTCAGGG 225217 ||| |||| || || |||| | ||| || | | || | ||| | || ||| Sbjct 102681 ACGGCAATACGCGACGACAGCGAGCACTGGAAGGTAATGTCGGTGATCTGGGGCTTGGGG 102740 Query 225218 ---CCAGTTTGGT--AAGCAAAGGCCAC-GCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 |||| | | |||| | | | ||||||| |||||| | ||||| Sbjct 102741 GTACCAGCGTACTGGAAGCTCATGTTGGTGGCACGCAG------GATGGCCTTGGCCTTG 102794 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTC 225331 | | | |||||| ||||| |||||||||||||| ||| || | | | | Sbjct 102795 GTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAGGCACCG 102854 Query 225332 AGGTCGTAGTAAGA--TGCAGCCTCGGGT-CGCT-TTGCCACGAAAGCAGACAGGTTTCC 225387 || |||||||| || ||| | |||| ||| ||| || || | |||||| || Sbjct 102855 AGCTCGTAGTAGGACTTGC--CAGCGGGCACGCGCTTGACA--AACTCCTTCAGGTTACC 102910 Query 225388 GAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGT 225446 | ||| | | ||||||| | || |||| || ||||| ||| | ||| || || Sbjct 102911 GCGGTAGCGCTTAAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGTTGT 102966 Query 225447 CAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGT 225506 | |||||||| |||||||| ||||| ||||| |||| | || | |||||| Sbjct 102967 CGAGGAAGCCGGAGTCGTGCGACACGATGATCGACGTGCAGGGCGAGTTGA---TGAGGT 103023 Query 225507 GCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 || | |||||| ||||| | ||||||| ||||| ||||| |||||||| ||| Sbjct 103024 A-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAGATGGTTGGTAGGCTCGTCCAGCAGC 103082 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || || || | | || || ||| || |||| ||||||||| ||||| || || Sbjct 103083 AGAATATCGGGGGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACCA 103142 Query 225626 GACAGGGAGCCGAT-TGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGT 225684 ||||||| ||| | | | | ||| || || |||| |||| |||| Sbjct 103143 GACAGGGCAGTGATCTCGCCCTCAACCATCTGCTGGGTGAA-GCCGAACTCGTTGAGCTG 103201 Query 225685 CTGGATAATGCGCTCGGGAGAGCTGCGAG-CGGCAACGTTGGGGTCGGACGAGA------ 225737 || ||| | ||| || | | || | || |||| || | | || Sbjct 103202 CTTGATGACATCCTC-------CTTGGTGACGTCGACCTTGGCCTCAGCC-AGCTTCTTC 103253 Query 225738 --GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTAC 225793 ||| | ||| |||||| || | | | | ||| | |||||| || ||| || Sbjct 103254 ATGGTCCAGTCAATGGTGGTCATCTCAGTATCGGCGGAGTCCAGGTCGTGCTCGACGAAC 103313 Query 225794 ACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACG 225852 || ||| || || | || | |||||||||||| | ||| | || || || || Sbjct 103314 ACGGTCTTGACCTCGCTCTGCTT-GGGGAAGCCCTCGACCTGCTCGTTGTTGATGGCGCG 103372 Query 225853 GAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT 225912 | |||||| |||||| | |||||||||||| || ||||| | | || ||||| Sbjct 103373 CATCAGGGTGGACTTGCCGGAACCGTTGGGACCGCACAGACCGTAGCGCTGGCCACGCTT 103432 Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972 | | ||| | || ||| || || |||||| |||| ||||| || |||||| ||| Sbjct 103433 CAGGCGCAGGTGGGTCTGGTTAAGCAGAATCTTGGCACCGTAGGCGAGCGAGAACGTGCA 103492 Query 225973 ATCGCACAGGTCCTCACCCTCCTCG 225997 | |||||||||||||||||||||| Sbjct 103493 GTTGCACAGGTCCTCACCCTCCTCG 103517 >seq11 Length=127203 Score = 107 bits (118), Expect = 4e-18 Identities = 145/201 (72%), Gaps = 12/201 (6%) Strand=Plus/Minus Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGA---TGGACGACAC---GTTCGTCAGGC 225497 |||| |||||||| |||||||||||||| || | ||| | | |||| || Sbjct 124285 CGTCGAGGAAGCCGGAGTCGTGGGACACGATCAGACTGGTGATCTCTGTGTTCTTC---- 124230 Query 225498 CCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGT 225557 ||||||| || ||||||||| | ||| |||||||| ||| || |||||||||| Sbjct 124229 --TTGAGGTACGACTCGAGCCATGCAATGTTCTCGACGTCCAAGTGATTCGTAGGTTCGT 124172 Query 225558 CCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCC 225617 |||| | ||||| ||| || | || ||||| |||| || | ||||||||| |||| Sbjct 124171 CCAGCAACAGGACGTCGGCCTTTTGCAGCATGGCACGCGCCAGCGCCAGCTTCATCTTCC 124112 Query 225618 AGCCCCCGGACAGGGAGCCGA 225638 | || || ||||| ||||||| Sbjct 124111 AACCACCCGACAGAGAGCCGA 124091 Score = 89.7 bits (98), Expect = 9e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | |||||||||||| ||| | |||| ||| |||| | || | || Sbjct 124754 TAGCGCCACTGCAGGTACTGGTTGGGCGTCTTTTCCAAGTGCATCTCGACGTGCTCGAGG 124695 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| |||||| |||||| || ||| | | Sbjct 124694 GCGTGCTGCTTGATGTAGCCGATCCGCAGGTTGGGGTGCTTCTCGACCTTGCCGCTGCTG 124635 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || ||||||| || || | ||||||||| || | |||||| ||||| |||||||| Sbjct 124634 GGGATGACCTCGCCCGTCAGCAGCTTGATGAGGGTCGACTTGCCGGCACCGTTGGGGCCG 124575 Query 225158 ATCACGCCAATCCGGGATGACA 225179 || ||| | | || || |||| Sbjct 124574 ATGACGGCGACACGCGACGACA 124553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617423239040