Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq67 123 3e-23 seq86 102 9e-17 seq390 95.1 1e-14 >seq67 Length=72276 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| |||| ||||||||||| || || ||||| || | ||| || || || Sbjct 65793 CGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 65852 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || || || ||||||||||||| || | || ||||||| Sbjct 65853 TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 65912 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| | | | |||||| |||||| || | |||||| Sbjct 65913 TCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATG 65972 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| ||||| || ||||| || || || ||||| || Sbjct 65973 GTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 66010 >seq86 Length=56920 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| || | ||| |||||| ||||| || || || | ||| ||||| | Sbjct 344 ACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGGGTCCGGCC 285 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || || ||||||||||| | || | || |||||| Sbjct 284 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 225 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| || |||| ||| | | | ||||| |||| || || || | | Sbjct 224 GTCCTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCGGAGCTC---TCGACTTCAAGGG 169 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| |||||||| |||||||| || || || ||||| Sbjct 168 TAATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129 >seq390 Length=196699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || | ||| || || | || || Sbjct 27384 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 27443 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || || ||||||||||| | || | || |||||||||| Sbjct 27444 CAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 27503 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || |||| | | | |||||| || || || || | |||||||| || Sbjct 27504 GATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTT 27563 Query 42179 GCCCGTTAGCGTCTTTACAAAG 42200 ||| || || ||||| || ||| Sbjct 27564 GCCGGTAAGGGTCTTCACGAAG 27585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209866650880