Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq211 235 5e-57 seq16 127 2e-24 seq67 93.3 4e-14 >seq211 Length=310440 Score = 235 bits (260), Expect = 5e-57 Identities = 988/1536 (64%), Gaps = 53/1536 (3%) Strand=Plus/Plus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || || || |||| || || || |||||||| |||| ||| || | | Sbjct 28919 AGGTCCTTGAGCAGCCACGGGTTCACGACCTGGAACTCGCCGGCCAGCACACGGCGCTGG 28978 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||| ||| | || || ||| | ||||| ||||| || || || | || | Sbjct 28979 TAGATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTCGAC 29038 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188 || || |||||| |||| || || | || || | |||||| | || | | Sbjct 29039 GCCGTGGGCATGGGAGCCATCAGCAGACTGTTGCGGATACCGTGCTCCTTGATCTTGAGA 29098 Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAAC 153248 | || | ||| ||||| || | ||||| | | | |||||||||| |||| | Sbjct 29099 CGGAGGGCGTCCCAGTCCCAGAGACCAGACGGCTTGACATCCCACATGTCGAACTGCAGG 29158 Query 153249 ACTCCT--CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCA 153306 | || |||| |||| ||||| | ||| |||| |||| || | ||||| Sbjct 29159 ATGCCCTGCGACA--CGGGGCTGCCCTCGTACGACGAGTAGGTGCCCTCAATCTCGGCCA 29216 Query 153307 GTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAA 153366 | || | || || ||| | | ||| ||||| ||| ||| || || ||||| Sbjct 29217 GGTCCGACGACGCAGTCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCT 29276 Query 153367 CGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCT 153426 || || || |||| | ||||||||||| || ||||| || |||||||||| Sbjct 29277 CGCGGGCCTCGGGCGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCT 29336 Query 153427 GGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGA 153485 ||| |||||| || ||||| || || | ||||||| | | || |||| | ||| Sbjct 29337 GGACACCGACACCAATGGGGCGGTGGCGCATGTTGCTGTTCTTGGC-CTCGGGCACGGGG 29395 Query 153486 TAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTA 153545 ||| ||| |||||| || ||| |||||||| || || || | || | | | | Sbjct 29396 TAGAAGTTGACATCGATGATGCGGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGC 29455 Query 153546 AGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCA-----A 153600 || |||| ||| |||||| | |||| | | ||| | | | |||||| | Sbjct 29456 AGCTTCTTGAAGTCATAGACC---TCGTTG--GTGTAGTCGACAAACGACGGCAGGGCCA 29510 Query 153601 TAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGC 153660 || ||||| || |||||||| ||| || | | | ||||| || ||||| | || Sbjct 29511 GCGAAGCCAGGTTGCAGACGGCGACCTCATCAGGGGCCGAGTACTCGACAATCTCCGTGC 29570 Query 153661 AGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGT 153720 | |||||| || ||| ||||| || | ||| ||||| ||||| ||||| || Sbjct 29571 ACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGT 29630 Query 153721 CTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG-C 153779 | ||| | |||||| | || |||||||||| || | |||| ||| | || | Sbjct 29631 CCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGG-CGTACCAC 29689 Query 153780 AGGTCCTGCGCT----CGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTA 153835 || | ||| || || | | ||||| |||||||| ||||||| ||||| Sbjct 29690 AGCTTCTGGGCCTTAACGGTCTTGATGCCG----CGGCCCTCCTTCTCGTACTTTTCGTA 29745 Query 153836 CAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACAT 153895 ||| ||| |||||||| ||||||||||| || ||||| || |||| | || ||||| Sbjct 29746 CAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACAT 29805 Query 153896 CAGCGACCACATATCGTCGGCGTT---GACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 |||| |||| ||| | || ||| || ||||||||| || || | ||| || Sbjct 29806 GAGCGTCCAC---TCGCCATTCTTCTCGACACGCTTCATGAACAGGTCAGGAATCCACAG 29862 Query 153953 CGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATT 154009 || | || ||||| || | |||||| ||| | ||||| ||||| Sbjct 29863 GGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAGATC 29919 Query 154010 GA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068 || | || | | ||| |||||||||||| || || | ||||| | |||||| || Sbjct 29920 GAGGAACTCGA-AGACGTCGGCGTGCCACGGCTCGAGGTAGATACAGAAGGCACCAGGAC 29978 Query 154069 GC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125 || || || ||||| || |||| ||| | | || ||||| || |||| |||||| Sbjct 29979 GCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTATTGAACACACGCAGCATGGGGA 30038 Query 154126 CCAGGCCGCTTGCGGTGCCGTTGGT---CGAATTGATCTTGCTGCCGCGGGCGCGCACTT 154182 | |||| | | ||||||||||| | | || | || ||| || || | Sbjct 30039 TGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTACGAGC--CCG-TCGCACGGATGC 30095 Query 154183 GATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCA-GTCGCCCAG 154240 | || ||||| | ||| || ||||| ||||| ||| || || ||||| ||| || Sbjct 30096 GGTGGACGTTGAGGCCGATACCGCCGGCCGT-CTTGGAGATCATGGCGCACGTC-TTGAG 30153 Query 154241 CGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACAT 154300 ||| ||||||||| || ||||| ||||| || | ||| | ||| ||||| ||| Sbjct 30154 CGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGAGGAAGCACGAGGACAG 30213 Query 154301 TTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTG 154360 || | | |||| || || || || ||||| ||||| || || | || | Sbjct 30214 CTGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGAACTTGTT 30273 Query 154361 GCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGC 154420 | ||| | ||| || || ||| | ||| || | |||||| ||||||| || Sbjct 30274 GGACATGTAGTTGTAGGTCTCAATGACACGTTCAATGTTATCGCCCCAGATGCCGACAGC 30333 Query 154421 GACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 ||| ||||||| ||||||||| ||||| ||| ||| | ||| | ||| | ||||| Sbjct 30334 GACACGCATGATCATGTGCTGGGGACGCTCGACGATCTTGCCGTCGAGCTTGAGCAGATA 30393 Query 154481 TCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 | |||||||| ||| |||| || |||| ||| Sbjct 30394 GGAACGCTCGAGGGTCTTGAAACCAAAGTACTGGTA 30429 >seq16 Length=123879 Score = 127 bits (140), Expect = 2e-24 Identities = 344/518 (66%), Gaps = 15/518 (3%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| ||||||| ||||| | ||||| || |||||| ||| | || Sbjct 3936 GTCCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATCACCGACGAGAAGTCC 3995 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | ||| |||| | || || ||||| |||||||| | || || || ||| | Sbjct 3996 ACCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGCGCC 4055 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || || ||||||| | | || | | || | |||||||||||||| ||| |||| Sbjct 4056 TTCTCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCCAAC 4115 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 ||| | || ||||| ||||| || |||||||| |||||||| ||||| || | | Sbjct 4116 GAGCTCATCTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTC---TCC 4172 Query 52566 CGCGTGACCGAAAAATTGGATTCGGA--CACGATCCTGAG--CATGTTCAAGGAGGCGGT 52621 | | | ||| || | | | || | |||| ||| || || || || Sbjct 4173 CAC----CTGAACAACCGCCCCAGCAAGCAGGTCATTGAGGACATTATCGTCGATGCCGT 4228 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 ||||| ||||||| | || | || ||||| || ||||| ||||||||| | Sbjct 4229 CAAGATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACTC 4288 Query 52682 GCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 || | |||| ||||||| ||||| || || || || ||| | || ||| ||| Sbjct 4289 -CACCCTCATGAAGCAGTACATTGAGTTCGTCGCTGACCGCCTGCTCGTCGCCCTC-GGC 4346 Query 52741 AGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG 52799 | | | ||| || | ||| ||| || || || || ||| | ||||| ||||| | Sbjct 4347 AACGACAAGGTCTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGC 4406 Query 52800 GGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| ||||||||||| ||||||||||| Sbjct 4407 GGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 4444 >seq67 Length=72276 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| || || || ||||||||| || || || | | | Sbjct 65816 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 65875 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||| ||||| || || || || || ||||| ||| || || | ||| Sbjct 65876 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 65935 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | |||||||| |||||||| | || | |||||||| || || || || | Sbjct 65936 G-TCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGA 65994 Query 138602 CAAAAATCTGCAT 138614 | ||||||||||| Sbjct 65995 CGAAAATCTGCAT 66007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259720183040