Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq211 190 2e-43 seq16 161 9e-35 seq86 125 7e-24 seq67 113 4e-20 seq390 105 6e-18 >seq211 Length=310440 Score = 190 bits (210), Expect = 2e-43 Identities = 992/1556 (64%), Gaps = 48/1556 (3%) Strand=Plus/Plus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| || ||| |||||| || || |||| || ||||| ||||||||||| || || Sbjct 28909 CATGTCGACCAGGTCCTTGAGCAGCCACGGGTTCACGACCTGGAACTCGCCGGCCAGCAC 28968 Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153 || | | | || | |||| ||| | |||||||| |||||||||| || || ||||| Sbjct 28969 ACGGCGCTGGTAGATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 29028 Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212 || |||| || || |||||| |||| ||||| | ||| | | ||||| || || Sbjct 29029 CGAGGTCGACGCCGTGGGCATGGGAGCCATCAGCAGACTGTTGCGGATACCGTGCTCCTT 29088 Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272 | ||||| || || | ||| | ||| | || | | || | || || | Sbjct 29089 G-ATCTTGAGACGGAGGGCGTCCCAGTCCCAGA---GACCAGACGGCTTGACATCCCACA 29144 Query 146273 TGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGT 146332 ||||| | |||| |||| | ||| |||||| ||||||||| || | || | Sbjct 29145 TGTCGAACTGCAGGATGCCCTGCGACACGGGGCTGCCCTCGTACGACGAGTAGGTGCCCT 29204 Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392 | |||| |||||| || | || ||| || | ||| |||||||| |||| Sbjct 29205 CAATCTCGGCCAGGTCCGACGACGCAGTCAGGGCGGCGTGGTAGATGGTCTCGAAGATCT 29264 Query 146393 TGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCG 146451 | ||||| |||| | |||||| ||| |||| || ||| || ||||| Sbjct 29265 GCTTGTTGA-GCTCGCGGGCCTCGGGCGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCA 29323 Query 146452 TCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCG 146511 || || |||||||| | |||||||||| ||||||||| | |||| |||||| || Sbjct 29324 TCAGCCAGACCCTGGACACCGACACCAATGGGGCGGTGGCGCATGTTGCTGTTCTTGGCC 29383 Query 146512 CCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTC 146571 | | ||| ||| |||| |||||||| ||| || || || || |||| | Sbjct 29384 TCGGGCACGGGGTAGAAGTTGACATCGATGATGCGGTTCAGGTTGCGGACAACAACCTGG 29443 Query 146572 GTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTT-TTAACGTTGACGCACTTGTT 146630 || | | |||| ||||| | | | ||| | || ||| || Sbjct 29444 GTGACCTCGTGCAGCTTCTTGAAGTCATA-GACCTCGTTGGTGTAGTCGACAAACGACGG 29502 Query 146631 GACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAAT 146690 | ||| | || |||| ||| || ||||| ||| || | | | |||| ||||| Sbjct 29503 CAGGGCCAGCGAAGCCAGGTTGCAGACGGCGACCTCATCAGGGGCCGAGTACTCGACAAT 29562 Query 146691 CTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT--- 146747 ||| | ||| |||||| || |||| |||||| || || ||||| || ||| Sbjct 29563 CTCCGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCT---CTTGCG 29619 Query 146748 GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGAT 146807 ||||||| |||||||||| |||||| | || ||||| ||| | || ||||| ||| Sbjct 29620 GTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGAT 29679 Query 146808 GAATCTAAACAAATC-TCTGGCCTTTACTTGTCTT-TCGTACAGTTTATTCTTTTCGTAT 146865 | | | || | | ||||| | ||| ||||| | | | ||| ||||| Sbjct 29680 G--GCGTACCACAGCTTCTGGGCCTTAACGGTCTTGATGCCGCGGCCCTCCTTCTCGTAC 29737 Query 146866 TTCTCGTACAATATTTCAAAACTAG-AACCGTACTCGTCGAGGAGGCCGGGATACTTTTT 146924 || ||||||| || |||| | |||||| ||| ||||| || ||| || Sbjct 29738 TTTTCGTACAGAGCCTC-GAACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTT 29796 Query 146925 GGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAAT 146984 || || | |||| ||| || ||||| || || || | ||| |||| || ||||| Sbjct 29797 AGGGCACATGAGCGTCCACTCGCCATTCTTCTCGACACGCTTCATGAACAGGTCAGGAAT 29856 Query 146985 CCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAA 147044 ||| ||| |||| | || ||||| || | | ||||| ||| ||| | || Sbjct 29857 CCACAGGGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAG 29916 Query 147045 GTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTT 147104 | ||||| ||| | | || | ||||| ||||| | ||| || || || Sbjct 29917 ATCGAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATACAGAAGGCACCAGG 29976 Query 147105 TCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGA 147161 ||| || || ||||| || |||| ||| | |||||||||| || || | ||||| Sbjct 29977 ACGCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTATTGAACACACGCAGCATGGG 30036 Query 147162 CACGAGGCCGCCGGATTT---TGTGGTGCCG---TTGTATTGA-------GCGCTGACGC 147208 | || |||| ||| | |||||||| |||| || || | || || Sbjct 30037 GATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTA-CGAGCCCGTCGCACGGATGC 30095 Query 147209 TTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGAC-TCGTGCAAG 147267 || ||| | || |||| ||| ||| || || || |||| ||| || || || | Sbjct 30096 GGTGGACGTTGAGGCCGATACCGCCGGCCGTCTTGGAGATCATGGCGCACGTCTTG-AGC 30154 Query 147268 GTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATT 147327 || | ||||||||| || |||||||| ||||||||| ||||| ||||| ||| Sbjct 30155 GTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGAGGAAGCACGAGGACAGC 30214 Query 147328 TGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGT---GAACGTGCCC 147384 |||| | |||||| || || |||||||| |||||| || |||| || Sbjct 30215 TGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGAACTTG-TT 30273 Query 147385 AGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGG 147444 || ||| | | || || |||||| | | || || |||||| ||| | | Sbjct 30274 GGA--CATGTAGTTGTAGGTCTCAATGACACGTTCAATGTTATCGCCCCAGATGCCGACA 30331 Query 147445 GCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGA 147504 ||||| ||||||| |||||||||||| || || | ||| | | | || || | ||| Sbjct 30332 GCGACACGCATGATCATGTGCTGGGGACGCTCGACGATCTTGCCGTCGAGCTTGAGCAGA 30391 Query 147505 TATCCATTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 || | | || || || |||||||||||||||| ||||| | |||| | || || Sbjct 30392 TA-GGAACGCTCGAGGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTCGCGGTCGT 30446 >seq16 Length=123879 Score = 161 bits (178), Expect = 9e-35 Identities = 348/516 (67%), Gaps = 17/516 (3%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| ||||| || | || |||| || ||| Sbjct 3939 CCCTGCATTCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATCACCGACGAGAAGTCCACC 3998 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | ||| | ||| | | |||||||| ||||||||| |||||||||||||| ||| Sbjct 3999 TTTGCCCAGCGTCTCGTTGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGCGCCTTC 4058 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 | | || || | | || | || | ||||||||||| || || ||||||| Sbjct 4059 TCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCCAACGAG 4118 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT---CTACTACAACACT 47306 || |||||| | ||||| |||||||||||| |||||||||| || || || | || || Sbjct 4119 CTCATCTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCCCAC-CT 4177 Query 47307 --AGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGT 47362 | | || | | ||| || | | | || ||||| | | ||| ||||| Sbjct 4178 GAACAACCGCCCCAGCAAGCAGGTCAT--------TGAG-GACATTATCGTCGATGCCGT 4228 Query 47363 CGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGC 47422 | || ||| |||||| || ||||||| |||||| | | | || |||||| | Sbjct 4229 CAAGATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACTC 4288 Query 47423 GGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTA 47482 | |||| ||||||| || || ||||| |||||||||||||| || | Sbjct 4289 CACCCTCATGAAGCAGTACATTGAGTTCGTCGCTGACCGCCTGCTCGTCGCCCTCGGCAA 4348 Query 47483 TCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGG 47542 |||| | |||| | || || || ||||| || ||| | ||||| ||||||| || Sbjct 4349 CGACAAGGTCTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGG 4408 Query 47543 CAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||||| |||||||||||||||||||| || Sbjct 4409 CAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 4444 >seq86 Length=56920 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || ||||| || || ||| || || || | Sbjct 343 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGGGTCCGGCCA 284 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| |||||||| || || || |||||||||||| Sbjct 283 TCTTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 224 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| ||||| | | |||||| | ||||||||||| | ||| | Sbjct 223 TCCTGGATCTTCGACTTGACGTTGT-CAATGGTGTCGGAGCTCTCGACTTCAAGGGTAAT 165 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || || ||||||||||| Sbjct 164 GGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129 >seq67 Length=72276 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | || ||| || || || ||||| ||| Sbjct 65778 GCACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 65837 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||||| || || ||||| || ||||| |||||| |||||||| ||||| Sbjct 65838 GACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGC 65897 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| ||| ||||| | |||| |||||| | || || Sbjct 65898 GGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCC 65957 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||||| || || || || || || ||||||||||| Sbjct 65958 ACCTCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 66007 >seq390 Length=196699 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||| || | Sbjct 27367 CCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 27426 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| | |||| |||||||| || || || Sbjct 27427 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCTGGGGGG 27486 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| ||||||| |||||| Sbjct 27487 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 27546 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || | ||| | || |||||||| || || || || || Sbjct 27547 TCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAA 27584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498232295680