Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq211 239 6e-58 seq16 122 1e-22 >seq211 Length=310440 Score = 239 bits (264), Expect = 6e-58 Identities = 906/1396 (65%), Gaps = 37/1396 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| |||||| ||||| |||||||| ||||| |||| || || | || || Sbjct 28979 TAGATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTCGAC 29038 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| ||||| || || |||||||||| ||| | || | || Sbjct 29039 GCCGTGGGCATGGGAGCCATCAGCAGACTGTTGCGGATACCGTGCTCCTTGATCTTGAGA 29098 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTT-GTCTCCCCCTCCCACATATCAAACTGGAG 116081 ||||||||||||||| || || | | || | |||||||| || ||||| || Sbjct 29099 CGGAGGGCGTCCCAGTCCCAGA-GACCAGACGGCTTGACATCCCACATGTCGAACTGCAG 29157 Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 116141 ||| || || ||| | || ||||| | | | || | |||||||| ||| |||| Sbjct 29158 GATGCCCTGCGACACGGGGCTGCCCTCGTACGACGAGTAGGTGCCCTCAATCTCGGCCAG 29217 Query 116142 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGC 116201 || || ||| ||||| ||||| || || ||||| || || | || | | Sbjct 29218 GTCCGACGACGCAGTCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTC 29277 Query 116202 CTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTT 116260 ||||||| || || || | | || || | | || |||| || ||||| | Sbjct 29278 GCGGGCCTCGGGCGACTCGAAGGGCATGCG-CAGAGCCAGGAAGGCATCAGCCAGACCCT 29336 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGG 116317 ||||||||| ||||| ||||| || | ||| || | ||| | | ||| ||||| Sbjct 29337 GGACACCGACACCAATGGGGCGGTGGCGCATGTT-GCTGTTCTTG--GCCTCGGGCACGG 29393 Query 116318 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 116377 | || || || |||||| | | || || || | ||||||| |||| || | Sbjct 29394 GGTAGAAGTTGACATCGATGATGCGGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGT 29453 Query 116378 GAAGCTTTTCGTAATCAAA-ACTGCGA--GTCTCTTCATTGACATACTTAGGAAGGGCGA 116434 | ||||| | | | ||| | || || || | || |||| || || ||||| | Sbjct 29454 GCAGCTTCTTGAAGTCATAGACCTCGTTGGTGTAGTC---GACAAACGACGGCAGGGCCA 29510 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 || ||||| || || || | | |||||| | | |||||| | ||| ||||| | Sbjct 29511 GCGAAGCCAGGTTGCAGACGGCGACCTCATCAGGGGCCGAGTACTCGACAATCTCCGTGC 29570 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 ||| || || || |||||||||| |||||| || || ||| ||| || | Sbjct 29571 ACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGT 29630 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||| ||||| | || | || ||||| || |||| || ||| || || | ||| | Sbjct 29631 CCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACA 29690 Query 116615 -CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGG 116673 | || | | || || || | || | || ||||||| |||||||||| ||| || Sbjct 29691 GCTTCTGGGCCTTA-ACGGTCTTGATGCCGCGGCCCTCCTTCTCGTACTTTTCGTACAGA 29749 Query 116674 GCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 ||||| ||||| ||||| ||| || | || || || || | || || | ||| Sbjct 29750 GCCTCGAACTCGTCACCGT-AGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAG 29808 Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 | ||| | ||| || ||| || ||||||||||| ||||| || ||||| || ||| Sbjct 29809 CGTCCACTCGCCATTCTTCTCGACACGCTTCATGAACAGGTCAGGAATCCACAGGGCCAG 29868 Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 ||| ||||| || ||| | || || | || || || |||| || | || || Sbjct 29869 GAACAGATCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCGAGGAACTC 29928 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACG 116906 | || || ||||||||||| || ||||| | || | || | |||| Sbjct 29929 GAAGACGTCGGCGTGCCACGGCTCGAGGTAGATACAGAAGGCACCAGGACGCTTG---TT 29985 Query 116907 ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966 ||| |||||| || || | || || || || || || ||||| || ||||| || Sbjct 29986 GCCACCCTGGTCAACGTAGCGAGCAGTGTTATTGAACACACGCAGCATGGGGATGATGCC 30045 Query 116967 ATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATG 117024 | || ||| || || || || |||||| | | || | || ||||| | Sbjct 30046 GTTGGACGTGCCGTTGGTGCCGGCAATGTACGAGCC--CGTCGCACGGATGCGGTGGACG 30103 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 | | || ||||| || ||| ||| ||||| |||||| | |||| || ||||| Sbjct 30104 TTGAGGCCGATACCGCCGGCCGTCTTGGAGATCATGGCGCACGTCTTGAGCGTGTCGTAG 30163 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT- 117143 || || || || ||| |||| | ||| ||||||||| |||| || ||||| Sbjct 30164 ATGCCCTCAATGCTGTCGTCCTTGATGTCGACGAGGAAGCACGAGGACAGCTG-GGCCTG 30222 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 117202 || || || |||||||| || || || | |||||| |||| | || | | |||||| | Sbjct 30223 GGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGA-ACTTGTTGGACATGT 30281 Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262 | ||||||||| | |||| ||||| || || || |||| | ||| |||| Sbjct 30282 AGTTGTAGGTCTCAATGACACGTTCAATGTTATCGCCCCAGATGCCGACAGCGACACGCA 30341 Query 117263 TAAACATGTATTGGGG 117278 | | ||||| ||||| Sbjct 30342 TGATCATGTGCTGGGG 30357 >seq16 Length=123879 Score = 122 bits (134), Expect = 1e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||||||||| |||||||| || || |||||| ||| || Sbjct 4156 GCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGGCCG 4097 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| |||||||| | |||||| || | | || | ||| ||||||||||| Sbjct 4096 GGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGAGAAGGCGCCCGAGAAGAAGATA 4037 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || ||||| |||| ||||||| |||||||| Sbjct 4036 CCCTCGACGGCAGCGAAAGCAACGAGACGCTGGGCAAAGG 3997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503887061120