Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq16 212 6e-50 seq86 132 5e-26 seq67 127 2e-24 seq390 123 2e-23 >seq16 Length=123879 Score = 212 bits (234), Expect = 6e-50 Identities = 352/502 (70%), Gaps = 10/502 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || ||||| || || || || || || | | || ||| | Sbjct 4450 TTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTC 4391 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720 ||| || || |||||||||| | | |||| |||| |||||| || ||||| Sbjct 4390 TCCATGAAGTCGAAGGGGTTGGTGGCGCGGTAGACCTTGTCGTTGCCGA---GGGCGACG 4334 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | ||| || |||||||| ||||| ||| |||| | | || | || ||| Sbjct 4333 AGCAGGCGGTCAGCGACGAACTCAATGTACTGCTTCATGAGGGTGGAGTTCATGCCGAGC 4274 Query 132781 AGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 || |||| ||||| || |||||||| || |||||||| ||| || ||| || Sbjct 4273 AGGGCGCAG-GGCAGGGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGCATCGACGAT 4215 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 || ||| || | | | ||| || || | || || ||| | || ||| || Sbjct 4214 AATGTCCTCAATGACCTGCTTGCTGGGGCGGTTGTTCAGGTGGGAGAAGAGCAGGCAGGC 4155 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 ||||||| |||| ||||||||| | || ||||| |||||| ||| |||| |||||| Sbjct 4154 AAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGG 4095 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 ||| || ||||| || |||||||| || |||| || ||| |||||| ||||||| || Sbjct 4094 CATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGAGAAGGCGCCCGAGAAGAAGATACC 4035 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTCTTTGCTGGCGATCC 133078 ||||||||| |||||||| || || |||| | | || |||| ||||| | || ||||| Sbjct 4034 CTCGACGGCAGCGAAAGCAACGAGACGCTGGGCAAAGGTGGACTTCTCGTC-GGTGATCC 3976 Query 133079 AGCGCAGCGCCCATTCGGCCTT 133100 ||||||| ||||| |||||||| Sbjct 3975 AGCGCAGAGCCCAGTCGGCCTT 3954 Score = 208 bits (230), Expect = 8e-49 Identities = 212/276 (77%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||||||| ||| || | || ||||| | ||||||||| ||| || || Sbjct 3835 GTAGGTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAA 3776 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || |||||| ||||| || || ||| |||||||| || || Sbjct 3775 GCCGTAGAAGCAGCGGGCCTCGGGGACCTGGACCTCGCCGCTGAAGCGCTCGACGAGGTT 3716 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||||||| ||||||||| || ||||| | |||| || || | ||| Sbjct 3715 CTCGTTGACGATGCCGTCGGAGGCGGCGAAGAAAGCCAGGATGTGCGAGACAAAGTAGCG 3656 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||||||| ||| | ||||||| || ||||||||||| || | |||||| Sbjct 3655 CTCGTCCTCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCCTC 3596 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| ||||| |||||||| || |||||||| Sbjct 3595 GGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 3560 >seq86 Length=56920 Score = 132 bits (146), Expect = 5e-26 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||||||||| ||||| ||| | || |||||| | || Sbjct 129 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACCATTACCCTTGAAGTCGAGAGCTCC 188 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | || |||| | || || |||| ||||| ||||| | ||||||| |||| Sbjct 189 GACACCATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCA-TCCCGCCTGACC 246 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| |||||||| || | || ||||| |||||| | Sbjct 247 AGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGGACCCTGTCCGACTATA 306 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||| || ||||| | || || || |||| |||||| || | ||||||| Sbjct 307 ACATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTGCGTGGCGGCC 357 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 38344 AGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGC 38403 |||| || || ||||||| ||||| || || | || ||||| ||||| || || | | Sbjct 1 AGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCC 60 Query 38404 GCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || ||||||||||||||| ||||| ||||||| || |||||||||| Sbjct 61 GCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTGCG 115 >seq67 Length=72276 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| |||||||||||| | || || || | Sbjct 66010 AAGATGCAGATTTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTTGAGGTGGAAAGC 65951 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || |||| ||||| ||||| || || ||||| Sbjct 65950 TCCGACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 65891 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| ||||| || |||| |||||||| ||||||| Sbjct 65890 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 65831 Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| ||| || ||||| |||| ||||| Sbjct 65830 AACATCCAGAAGGAGAGC-ACCCTGCACCTGGTCCTGCG 65793 >seq390 Length=196699 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || || ||||| ||||||||| | || |||||| || | |||| | Sbjct 27584 TTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACGATC 27525 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| || Sbjct 27524 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTG 27465 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| ||||| |||||||| || | |||||||| |||||||||||||| ||| Sbjct 27464 ATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAG 27405 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||| ||||| ||||||| || Sbjct 27404 GAGTCGACCCTGCACCTGGTGCTCCG 27379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170099066880