Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq86 152 1e-31 seq67 125 2e-23 seq211 91.5 3e-13 >seq86 Length=56920 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || ||||| || || |||| || || | |||||||| Sbjct 337 ACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGGGTCCGGCCATCTTCC 278 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 277 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 218 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| || || || ||||||||||||| ||||| Sbjct 217 ATCTTCGACTTGACGTTGTCAATGGTGTCGGAGCTCTCGACTTCAAGGGTAATGGTCTTG 158 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 157 CCCGTGAGCGTCTTGACGAAAATCTGCAT 129 >seq67 Length=72276 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || || || ||||| |||| || || | || || ||| Sbjct 65799 ACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 65858 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 65859 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 65918 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| || |||||||| |||||||| | || || Sbjct 65919 ATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTTTTA 65978 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 65979 CCCGTGAGGGTCTTGACGAAAATCTGCAT 66007 >seq211 Length=310440 Score = 91.5 bits (100), Expect = 3e-13 Identities = 184/270 (68%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 160595 GCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTT 160654 ||| | |||| | | || || ||||||||| | || | | ||||| || |||| || Sbjct 29865 GCCCTGTGGATTCCTGACCTGTTCATGAAGCGTGTCGAGAAGAATGGCGAGTGGACGCTC 29806 Query 160655 TTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTT 160714 | || || || || ||||| || | ||| || ||| |||||||||| |||| Sbjct 29805 ATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACGGTGACGAGTTCGAGGCTCTG 29746 Query 160715 TATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGG 160774 || |||| ||||| || ||||| | | || ||| ||| |||||||| | |||||| Sbjct 29745 TACGAAAAGTACGAGAAGGAGGGCCGCGGCATCAAGACCGTTAAGGCCCAGAAGCTGTGG 29686 Query 160775 CATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCC 160834 | |||||| | ||||| |||| || | ||||| || |||||||| || Sbjct 29685 TACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGA--CC 29628 Query 160835 ATCTGT---CGCAAGAGTAACCAGAAGAAC 160861 | ||| |||||||| |||||||||||| Sbjct 29627 A-CTGCAACCGCAAGAGCAACCAGAAGAAC 29599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475459019344