Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq86 118 7e-22 seq67 104 2e-17 seq390 91.5 1e-13 >seq86 Length=56920 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||||||||||||||| || ||| | || |||| ||| Sbjct 337 ACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGGGTCCGGCCATCTTCC 278 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| |||| | ||||||||||| Sbjct 277 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 218 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | || | ||| || || | ||| ||||| || Sbjct 217 ATCTTCGACTTGACGTTGTCAATGGTGTCGGAGCTCTCGACTTCAAGGGTAATGGTCTTG 158 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||||| ||||| || || ||||||||| Sbjct 157 CCCGTGAGCGTCTTGACGAAAATCTGCATA 128 >seq67 Length=72276 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 65799 ACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 65858 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| |||| | ||||||||||| Sbjct 65859 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 65918 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| || | ||||| || | || || || | ||| ||||| Sbjct 65919 ATCTTCGACTTGAC--AT--TGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGT 65974 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| |||||||| ||||| || || |||||||| || Sbjct 65975 TTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 66010 >seq390 Length=196699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || |||| |||||||| || || || || Sbjct 27403 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAA 27462 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| ||||| Sbjct 27463 ATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 27522 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || || | ||| ||||| || || || || |||||||| Sbjct 27523 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACG 27582 Query 34971 AAG 34973 ||| Sbjct 27583 AAG 27585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631890804096