Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq211 524 1e-143 seq16 226 5e-54 >seq211 Length=310440 Score = 524 bits (580), Expect = 1e-143 Identities = 1258/1879 (67%), Gaps = 82/1879 (4%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || | |||||||||| ||||| || ||||||||||| ||||| Sbjct 28598 ACAGTGAACTGGATGGGCTGGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTG 28657 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATTCTG 212671 || ||| ||||||| | |||||| |||| ||| |||| | || || | Sbjct 28658 AGACCCAGCTTCCAGCCGGTGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATGGTCGG 28710 Query 212672 GTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCT 212731 ||| | |||| | ||| || ||||| |||||| || || | | | Sbjct 28711 CTCACGCATGTGG---------ATGTTGAGCGACTGCGACTGGTCGATAAACGCACCACG 28761 Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 ||| |||||||| | | || | || |||| ||||||||| |||||| | | | Sbjct 28762 GTCGGCGGCCATCTGCACAATTGTGCGTTGCGAGATCTCCCACACAGTCTTGTACAGAGC 28821 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCC--CCTGTGTA-TGGTCAG 212848 ||| || | |||| | ||||||||||| | || || ||| | | || | | Sbjct 28822 CTTGGTCTCAGCGGGGATGTTAGGGATGTTCTGGATCGAACCGCCCTCGGCAATGATGCG 28881 Query 212849 CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908 | | ||||| || ||| |||||| || ||||| ||||| ||| || Sbjct 28882 GTTCTT---CATGTTGTCCGACCACAGGCCCATGTCGACCAGGTCCTTGAGCAGCCACGG 28938 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || | |||||| || || | ||||| | | |||||| | ||| || |||||||| Sbjct 28939 GTTCACGACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTAGGG 28998 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||| || ||||||||| ||||||||||| | || || |||||||||||||||| Sbjct 28999 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTCGACGCCGTGGGCATGGGAGCCAT 29058 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088 ||| |||||||| | | |||||||| ||| | | || || | |||||||||| Sbjct 29059 CAGCAGACTGTTGCGGATACCGTGCTCCTTGATCTTGAGACGGAGGGCGTCCCAGTCCCA 29118 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 |||||| | ||| || | ||||||||| ||||||| |||||| | Sbjct 29119 GAGACCAGACGG---------CTTGACATCCCACATGTCGAACTGCAGGATGCCCTGCGA 29169 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 |||||||||||||| ||| || ||||||| ||| | || |||||| || | ||||| Sbjct 29170 CACGGGGCTGCCCTCGTACGACGAGTAGGTGCCCTCAATCTCGGCCAGGTCCGACGACGC 29229 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 |||||| |||| ||||||||| || || |||| | ||||||||| |||||| || Sbjct 29230 AGTCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCGCGGGCCTCGGG 29289 Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCC 213328 ||| ||||||||| || |||| |||||||||| |||||||| |||| || Sbjct 29290 CGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACC 29349 Query 213329 GATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTC 213388 ||||| | ||| | || ||| || | ||| || |||||| |||||| || Sbjct 29350 AATGGGGCGGTGGCGCATGTTGCTGTTCTTGGCCTCGGGCACGGGGTAGAAGTTGACATC 29409 Query 213389 GATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT---CGTG 213445 |||||| ||| ||||||||| | || | |||||| | | ||| | || || Sbjct 29410 GATGATGCGGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGCAGCTTCTTGAAGTC 29469 Query 213446 ATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCA 213505 || || | ||| | || | |||||| |||||||| | ||||||||||| Sbjct 29470 ATAGACCTCGTTG---GTGTAGTCGACAAACGACGGCAGGGCCAGCGAAGCCAGGTTGCA 29526 Query 213506 AACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCG 213565 ||||| ||||| | || | | | |||||| | ||||| |||||||||||| || || Sbjct 29527 GACGGCGACCTCATCAGGGGCCGAGTACTCGACAATCTCCGTGCACAGGTTGGAGCTGCG 29586 Query 213566 GATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGT 213624 ||||||||||||||||| ||| ||| ||||| | |||| |||||||| |||||| Sbjct 29587 GATGGTGCCCAGGTTCTTCTGG-TTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGA 29645 Query 213625 AGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGA 213684 ||||| |||||||| ||||| | | || || | ||| || | | |||||| Sbjct 29646 AGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGGGCCTT-- 29703 Query 213685 CCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCG 213743 | | | || || ||| | | |||||||| |||||| || | | ||| ||| Sbjct 29704 --AACGGTCTTGATGCCGCGGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCG 29761 Query 213744 TGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATGCG---GGACACATGAGGCTCCAGT 213798 | || || | || ||| || || |||| | || || |||||||| |||| | Sbjct 29762 TCACCGTAG---CAGT-CAG-CCAGGCCAGGGCACTCGTTAGGGCACATGAGCGTCCACT 29816 Query 213799 C-CCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGG 213857 | || || |||| ||| | || |||||||||||| || | |||||| || |||||| Sbjct 29817 CGCCATTCTTCTC-GACACGCTTCATGAACAGGTCAGGAATCCACAGGGCCAGGAACAGA 29875 Query 213858 TCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATG 213917 || | || | ||| ||| || ||| ||||||||||| || || || |||| | Sbjct 29876 TCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCGAGGAACTCGAAGACG 29935 Query 213918 TCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGG 213974 || |||||||||||||| | |||||| ||||| || | || | ||||| |||||| Sbjct 29936 TCGGCGTGCCACGGCTCGAGGTAGATACAGAAGGCACCAGGACGCTTGTTGCCACCCTGG 29995 Query 213975 TCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030 | || | | || | || | ||||| | ||||| | ||| | | |||||||| Sbjct 29996 T----CAACGTAGCGAGCAGTGTTATTGAACACACGCAGCATGGGGATGATGCCGTTGGA 30051 Query 214031 CTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GA 214086 | |||||||| || || || |||||||| | || | || ||| |||| || Sbjct 30052 CGTGCCGTTGGTGCCGGCAATGTACGAGCCCGTCGCAC---GGATGC-GGTGGACGTTGA 30107 Query 214087 GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGC 214146 | || || || ||||| |||||||||||||||||| | | | || || ||||| Sbjct 30108 GGCCGATACCGCCGGCCGTCTTGGAGATCATGGCGCACGTCTTGAGCGTGTCGTAGATGC 30167 Query 214147 CGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACG 214206 | | |||||||| || ||| || | | |||||| || ||||||| | || || Sbjct 30168 CCTCAATGCTGTCGTCCTTGATGTCGACGAGGAAGCACGAGGACAGCTGGGCCTGGGGCG 30227 Query 214207 AGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGT 214266 ||| | ||||||||||||||| ||| ||| | | |||||||| || | | ||| Sbjct 30228 TGCCGGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGAACTTGTTGGACATGTAGTTGT 30287 Query 214267 AGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCA 214326 ||||||| | ||| |||| | ||| | |||| | ||| | || Sbjct 30288 AGGTCTCAATGACACGTTCAATGTTATCGCCCCAGATGCCGACAGCGACACGCATGATCA 30347 Query 214327 TGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGCTCCA 214383 |||||||||| | ||| | | || ||| | | ||||||||| ||||| ||||| | Sbjct 30348 TGTGCTGGGGACGCTCGA-CGATC--TTGCCGTCGAGCTTGAGCAGATAGGAACGCTCGA 30404 Query 214384 GAGTCTTGAACCCAAAGTA 214402 | |||||||| |||||||| Sbjct 30405 GGGTCTTGAAACCAAAGTA 30423 >seq16 Length=123879 Score = 226 bits (250), Expect = 5e-54 Identities = 357/505 (71%), Gaps = 11/505 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | | |||||||||||| Sbjct 4448 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTC 4389 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | | || ||| |||| ||| | | |||| Sbjct 4388 CATGAAGTCGAAGGGGTTGGTGGCGCGGTAGACCT-TGTCGTTGCCGAGGGCGACGAGCA 4330 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||| ||||| | |||||||||| ||||||||| | |||| Sbjct 4329 GGCGGTCAGCGACGAACTCAATGTACTGCTTCATGAGGGTGGAGTTCATGCCGAGCAGGG 4270 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| |||| ||||| ||||||| ||| |||| ||||| || | | ||| | Sbjct 4269 CGCAGGGCAGGGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGCATCGACGATAATGT 4210 Query 48078 GCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || | || ||| || | ||||| |||||| || |||||| ||||| Sbjct 4209 CCTCAATGACCTGCTTGCTGGGGCGGTTGTT---CAGGTG---GGAGAAGAGCAGGCAGG 4156 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| |||||| ||| ||||| || ||||||| ||||||||||| || || | Sbjct 4155 CAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGGCCGG 4096 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || ||||||||||| || | | ||| | ||| ||||||||||| | Sbjct 4095 GCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGAGAAGGCGCCCGAGAAGAAGATAC 4036 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || ||| | || | || | | |||| ||| | ||||| Sbjct 4035 CCTCGACGGCAGCGAAAGCAACGAGACGCTGGGCAAAGGTGGACTTCTCGTCGGTGATCC 3976 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTT 48339 || || |||||||| |||||||| Sbjct 3975 AGCGCAGAGCCCAGTCGGCCTTCTT 3951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527769722880