Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09]
432 sequences; 37,827,857 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq211 325 7e-84
seq16 141 2e-28
>seq211
Length=310440
Score = 325 bits (360), Expect = 7e-84
Identities = 900/1349 (67%), Gaps = 63/1349 (5%)
Strand=Plus/Plus
Query 221354 GACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGAC 221413
||||| || || || ||||||||| ||||| || | | |||||| || | | |||
Sbjct 29168 GACACGGGGCTGCCCTCGTACGACGAGTAGGTGCCCTCAATCTCGGCCAGGTCCGACGAC 29227
Query 221414 TGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTC 221472
|||||||| ||||||||||||||||| |||||| ||||||||| ||| || ||||
Sbjct 29228 GCAGTCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCGCGGGCCTC 29286
Query 221473 GGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532
||| || ||||||||| ||||| | | ||| | || ||||| ||||| || ||||
Sbjct 29287 GGGCGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGAC 29346
Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592
||| ||||| | ||| | | ||||| || || |||||||| || ||||||||
Sbjct 29347 ACCAATGGGGCGGTGGCGCATGTTGCTGTTCTTGGCCTCGGGCACGGGGTAGAAGTTGAC 29406
Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652
||||| | || ||||||| || ||| ||| |||| ||| | || || |
Sbjct 29407 ATCGATGA------TGCGGTTCAGGTTGCGGAC---AACAACCTGGGTGACCTCGTGCAG 29457
Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712
|| | || || | | |||| | | || ||||| | ||||| |
Sbjct 29458 CTT---CTTGAAGTCATAGACCTCGTTGGTGTAGTCGACAAACGACGGCAGGGCCAGCGA 29514
Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772
|||||||| || ||||| ||||| || | | |||| | ||||| || || ||
Sbjct 29515 AGCCAGGTTGCAGACGGCGACCTCATCAGGGGCCGAGTACTCGACAATCTCCGTGCACAG 29574
Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831
|||| || |||||| ||||||| || || || |||||| ||| ||| | ||||
Sbjct 29575 GTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCT 29633
Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891
|||| ||||| ||||| ||| ||||| ||| ||| | || || || ||| || |
Sbjct 29634 TGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCT 29693
Query 221892 CTCTGGCGCTCACCGTCCTCTTGA--CTGCA-CCCTCGGTCTTTTCATACCCG--GTATA 221946
||||| || | || |||||| | || ||||| ||| || ||| ||| |
Sbjct 29694 -TCTGGGCCTTAACGG--TCTTGATGCCGCGGCCCTC---CTTCTCGTACTTTTCGTACA 29747
Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006
|||| | | |||| |||||||| || ||||||| || ||| | || |||||
Sbjct 29748 GAGCCT--CGAACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACAT 29805
Query 222007 CAGACTCCAGT-GC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063
|| |||| | || || || || ||| | || |||||| ||||| || ||||||||
Sbjct 29806 GAGCGTCCACTCGCCATTCTTCTC---GACACGCTTCATGAACAGGTCAGGAATCCACAG 29862
Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA 222123
||| | || ||||| | || || ||||||| ||||| ||| || | |||||| |
Sbjct 29863 GGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCGAG 29922
Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA--GCGCCGGGTCGC 222181
||||| || | ||| |||||||||||||| || |||| |||| || || || |||
Sbjct 29923 GAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGA--TACAGAAGGCACCAGGACGC 29980
Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAG-AGCG---TTGAAGATGCGAAGGGTCGG 222237
|||||||||||||| | || | | | || || | ||||| | || || | ||
Sbjct 29981 TTGTTGCCACCCTGGT----CAACGTAGCGAGCAGTGTTATTGAACACACGCAGCATGGG 30036
Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297
| | |||||||| ||||||||||| |||||||| | ||| | | | || |
Sbjct 30037 GATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTACGAGC--CCGTCGCAC-GGAT 30093
Query 222298 ACTGGCAGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353
| || ||| | ||||||||| ||||| || |||||||||||||| ||||||
Sbjct 30094 GC-GGTGGACGTTGAGGCCGATACCGCCGGCCGTCTTGGAGATCATGGCGCACGTCTTGA 30152
Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413
| ||||| ||||||||| || ||| ||||||| || | || || || || ||||
Sbjct 30153 GCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGAGGAAGCACGAGGACA 30212
Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473
||| | | || | | |||||| || |||||||| |||||| || ||| |
Sbjct 30213 GCTGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGAACTTGT 30272
Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATG 222532
| ||||| | ||| ||||| | ||| | | ||||| || ||| || | | |
Sbjct 30273 TGGACATGTAGTTGTAGGTCTCAATGACACGTTCAATGTTATCGCCCCAGATGCCG-ACA 30331
Query 222533 GCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGC 222589
||| | |||| ||||| |||||| | ||| || | | || | ||||| ||||
Sbjct 30332 GCGACACGCATGATCATGTGCTGGGGACGCTCGAC-GATCTTGCCGTCGAGCT--TGAGC 30388
Query 222590 AGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGA 222649
|| || || || || |||||||| |||||||| | | || ||||| | | |||
Sbjct 30389 AGATAGGAACGCTCGAGGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTCGCGGTCGTAG 30448
Query 222650 ACCACGGCGGCGTCCAGCTCCGACTTGTG 222678
|| | ||| | ||| | ||| ||||||
Sbjct 30449 ACAATGGCCGAGTCAAAGTCCTCCTTGTG 30477
Score = 114 bits (126), Expect = 2e-20
Identities = 137/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124
||| | ||||| ||| || ||| | || |||| |||||| || | |||||| ||
Sbjct 28888 CATGTTGTCCGACCACAGGCCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTCACGAC 28947
Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184
||||| || || | ||||| | | |||||| | ||| || ||| | || |||| ||
Sbjct 28948 CTGGAACTCGCCGGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTAGGGCTCGAAGCA 29007
Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244
||||||||||||||| ||||| | || || ||||||||||| |||| |||||||||
Sbjct 29008 CTCGTTGTTGCCCAGAATCTGCGAGGTCGACGCCGTGGGCATGGGAGCCATCAGCAGACT 29067
Query 221245 GTTGCG 221250
||||||
Sbjct 29068 GTTGCG 29073
>seq16
Length=123879
Score = 141 bits (156), Expect = 2e-28
Identities = 320/482 (66%), Gaps = 15/482 (3%)
Strand=Plus/Plus
Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905
||||||| | | ||| | || |||| | |||| || || || || ||||| || |||
Sbjct 3975 TGGATCACCGACGAGAAGTCCACCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCCGTCGAG 4034
Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATG 25965
|| ||||| ||| || | || | ||||||||||||||||| || || |||
Sbjct 4035 GGTATCTTCTTCTCGGGCGCCTTCTCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATG 4094
Query 25966 CCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTT 26025
||||| ||| ||| ||||||||||||||| | |||||||| || |||| || |||
Sbjct 4095 CCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGCCTGCACACCGACTTT 4154
Query 26026 GCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG-AG---ACCGTCTA 26081
||||||||||||| | | |||| || | || || |||| || | | |
Sbjct 4155 GCCTGCCTGCTCTTCTC---CCACCTGAACAAC-CGCCCCAGCAAGCAGGTCATTGAGGA 4210
Query 26082 CAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNN 26141
|| |||| || || || || |||||||| ||||||| |
Sbjct 4211 CATTATCGTC---GATGCCGTCAAGATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTG 4267
Query 26142 NNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCA 26201
| ||||||||| || ||||||| || |||||||||| || || ||||
Sbjct 4268 CGCCCTGCTCGGCATGAACTCCACCCTCATGAAGCAGTACATTGAGTTCGTCGCTGACCG 4327
Query 26202 TCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTT 26259
||||| || ||| || || || || ||||| | | | ||||| ||||||||
Sbjct 4328 CCTGCTCGTCGCC--CTCGGCAACGACAAGGTCTACCGCGCCACCAACCCCTTCGACTTC 4385
Query 26260 ATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTAT 26319
||||| ||||| ||| | | || |||||||||||||| || ||| | |||||||| ||
Sbjct 4386 ATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 4445
Query 26320 CA 26321
||
Sbjct 4446 CA 4447
Score = 111 bits (122), Expect = 3e-19
Identities = 166/234 (71%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| | ||| |||||||||||| ||||||||||||
Sbjct 3551 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATTGATCTG 3610
Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||||| || ||| |||| | ||| || | | ||||||| | ||| ||
Sbjct 3611 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGAGGACGAGCGCTACTTTGTCTC 3669
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
| || | |||| ||||| || ||||| || || || || |||||||| || |||| |
Sbjct 3670 GCACATCCTGGCTTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTCGTCGAGCG 3729
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | | || || ||| | |||||| || |||||||| ||||||||
Sbjct 3730 CTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 3783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928839784238080
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