Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq211 325 7e-84 seq16 141 2e-28 >seq211 Length=310440 Score = 325 bits (360), Expect = 7e-84 Identities = 900/1349 (67%), Gaps = 63/1349 (5%) Strand=Plus/Plus Query 221354 GACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGAC 221413 ||||| || || || ||||||||| ||||| || | | |||||| || | | ||| Sbjct 29168 GACACGGGGCTGCCCTCGTACGACGAGTAGGTGCCCTCAATCTCGGCCAGGTCCGACGAC 29227 Query 221414 TGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTC 221472 |||||||| ||||||||||||||||| |||||| ||||||||| ||| || |||| Sbjct 29228 GCAGTCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCGCGGGCCTC 29286 Query 221473 GGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 ||| || ||||||||| ||||| | | ||| | || ||||| ||||| || |||| Sbjct 29287 GGGCGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGAC 29346 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 ||| ||||| | ||| | | ||||| || || |||||||| || |||||||| Sbjct 29347 ACCAATGGGGCGGTGGCGCATGTTGCTGTTCTTGGCCTCGGGCACGGGGTAGAAGTTGAC 29406 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||||| | || ||||||| || ||| ||| |||| ||| | || || | Sbjct 29407 ATCGATGA------TGCGGTTCAGGTTGCGGAC---AACAACCTGGGTGACCTCGTGCAG 29457 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 || | || || | | |||| | | || ||||| | ||||| | Sbjct 29458 CTT---CTTGAAGTCATAGACCTCGTTGGTGTAGTCGACAAACGACGGCAGGGCCAGCGA 29514 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||||| || ||||| ||||| || | | |||| | ||||| || || || Sbjct 29515 AGCCAGGTTGCAGACGGCGACCTCATCAGGGGCCGAGTACTCGACAATCTCCGTGCACAG 29574 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831 |||| || |||||| ||||||| || || || |||||| ||| ||| | |||| Sbjct 29575 GTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCT 29633 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| ||||| ||||| ||| ||||| ||| ||| | || || || ||| || | Sbjct 29634 TGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCT 29693 Query 221892 CTCTGGCGCTCACCGTCCTCTTGA--CTGCA-CCCTCGGTCTTTTCATACCCG--GTATA 221946 ||||| || | || |||||| | || ||||| ||| || ||| ||| | Sbjct 29694 -TCTGGGCCTTAACGG--TCTTGATGCCGCGGCCCTC---CTTCTCGTACTTTTCGTACA 29747 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 |||| | | |||| |||||||| || ||||||| || ||| | || ||||| Sbjct 29748 GAGCCT--CGAACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACAT 29805 Query 222007 CAGACTCCAGT-GC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 || |||| | || || || || ||| | || |||||| ||||| || |||||||| Sbjct 29806 GAGCGTCCACTCGCCATTCTTCTC---GACACGCTTCATGAACAGGTCAGGAATCCACAG 29862 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA 222123 ||| | || ||||| | || || ||||||| ||||| ||| || | |||||| | Sbjct 29863 GGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCGAG 29922 Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA--GCGCCGGGTCGC 222181 ||||| || | ||| |||||||||||||| || |||| |||| || || || ||| Sbjct 29923 GAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGA--TACAGAAGGCACCAGGACGC 29980 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAG-AGCG---TTGAAGATGCGAAGGGTCGG 222237 |||||||||||||| | || | | | || || | ||||| | || || | || Sbjct 29981 TTGTTGCCACCCTGGT----CAACGTAGCGAGCAGTGTTATTGAACACACGCAGCATGGG 30036 Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297 | | |||||||| ||||||||||| |||||||| | ||| | | | || | Sbjct 30037 GATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTACGAGC--CCGTCGCAC-GGAT 30093 Query 222298 ACTGGCAGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 | || ||| | ||||||||| ||||| || |||||||||||||| |||||| Sbjct 30094 GC-GGTGGACGTTGAGGCCGATACCGCCGGCCGTCTTGGAGATCATGGCGCACGTCTTGA 30152 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 | ||||| ||||||||| || ||| ||||||| || | || || || || |||| Sbjct 30153 GCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGAGGAAGCACGAGGACA 30212 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 ||| | | || | | |||||| || |||||||| |||||| || ||| | Sbjct 30213 GCTGGGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGAACTTGT 30272 Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATG 222532 | ||||| | ||| ||||| | ||| | | ||||| || ||| || | | | Sbjct 30273 TGGACATGTAGTTGTAGGTCTCAATGACACGTTCAATGTTATCGCCCCAGATGCCG-ACA 30331 Query 222533 GCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGC 222589 ||| | |||| ||||| |||||| | ||| || | | || | ||||| |||| Sbjct 30332 GCGACACGCATGATCATGTGCTGGGGACGCTCGAC-GATCTTGCCGTCGAGCT--TGAGC 30388 Query 222590 AGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGA 222649 || || || || || |||||||| |||||||| | | || ||||| | | ||| Sbjct 30389 AGATAGGAACGCTCGAGGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTCGCGGTCGTAG 30448 Query 222650 ACCACGGCGGCGTCCAGCTCCGACTTGTG 222678 || | ||| | ||| | ||| |||||| Sbjct 30449 ACAATGGCCGAGTCAAAGTCCTCCTTGTG 30477 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 ||| | ||||| ||| || ||| | || |||| |||||| || | |||||| || Sbjct 28888 CATGTTGTCCGACCACAGGCCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTCACGAC 28947 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| || || | ||||| | | |||||| | ||| || ||| | || |||| || Sbjct 28948 CTGGAACTCGCCGGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTAGGGCTCGAAGCA 29007 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||| ||||| | || || ||||||||||| |||| ||||||||| Sbjct 29008 CTCGTTGTTGCCCAGAATCTGCGAGGTCGACGCCGTGGGCATGGGAGCCATCAGCAGACT 29067 Query 221245 GTTGCG 221250 |||||| Sbjct 29068 GTTGCG 29073 >seq16 Length=123879 Score = 141 bits (156), Expect = 2e-28 Identities = 320/482 (66%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 ||||||| | | ||| | || |||| | |||| || || || || ||||| || ||| Sbjct 3975 TGGATCACCGACGAGAAGTCCACCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCCGTCGAG 4034 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATG 25965 || ||||| ||| || | || | ||||||||||||||||| || || ||| Sbjct 4035 GGTATCTTCTTCTCGGGCGCCTTCTCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATG 4094 Query 25966 CCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTT 26025 ||||| ||| ||| ||||||||||||||| | |||||||| || |||| || ||| Sbjct 4095 CCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGCCTGCACACCGACTTT 4154 Query 26026 GCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG-AG---ACCGTCTA 26081 ||||||||||||| | | |||| || | || || |||| || | | | Sbjct 4155 GCCTGCCTGCTCTTCTC---CCACCTGAACAAC-CGCCCCAGCAAGCAGGTCATTGAGGA 4210 Query 26082 CAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNN 26141 || |||| || || || || |||||||| ||||||| | Sbjct 4211 CATTATCGTC---GATGCCGTCAAGATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTG 4267 Query 26142 NNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCA 26201 | ||||||||| || ||||||| || |||||||||| || || |||| Sbjct 4268 CGCCCTGCTCGGCATGAACTCCACCCTCATGAAGCAGTACATTGAGTTCGTCGCTGACCG 4327 Query 26202 TCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTT 26259 ||||| || ||| || || || || ||||| | | | ||||| |||||||| Sbjct 4328 CCTGCTCGTCGCC--CTCGGCAACGACAAGGTCTACCGCGCCACCAACCCCTTCGACTTC 4385 Query 26260 ATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTAT 26319 ||||| ||||| ||| | | || |||||||||||||| || ||| | |||||||| || Sbjct 4386 ATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 4445 Query 26320 CA 26321 || Sbjct 4446 CA 4447 Score = 111 bits (122), Expect = 3e-19 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| |||||||||||| |||||||||||| Sbjct 3551 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATTGATCTG 3610 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| | ||| || | | ||||||| | ||| || Sbjct 3611 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGAGGACGAGCGCTACTTTGTCTC 3669 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | || | |||| ||||| || ||||| || || || || |||||||| || |||| | Sbjct 3670 GCACATCCTGGCTTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTCGTCGAGCG 3729 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || ||| | |||||| || |||||||| |||||||| Sbjct 3730 CTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 3783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839784238080