Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq124 141 3e-28 seq24 102 2e-16 seq16 91.5 4e-13 >seq124 Length=385807 Score = 141 bits (156), Expect = 3e-28 Identities = 201/278 (72%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 |||||||| | ||||| | ||||||||| || ||||| ||| | || || ||||| Sbjct 177316 GTCTTCCAGAGCCTTGACCAGACGACGCTGGATGTAACCGGTTTCGGCAGTCTTGACAGC 177375 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-- 302688 ||| ||||| ||||| |||||||| |||| || |||||||| | ||| || ||| Sbjct 177376 TGTGTCAATCAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAACTCGGTGGG-CGTCA 177434 Query 302689 AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTG 302748 |||| | || | | || |||| ||||||||||| ||||||||||| | |||| |||| Sbjct 177435 AGCCACGCAGGTACG-AGTTCTCGACGAAACCACGGGCCTCGGGCGAGTAGTCGTCCTTG 177493 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 || || || |||||||| | || || |||| | || ||||| || || || || Sbjct 177494 GTGAAATGGGGCAGGGTGCGGTACTTGAAGCCAAAGGGAATACGGCGACCTTCGACAATC 177553 Query 302809 TGCTGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| | ||||| || ||||||||||||| || Sbjct 177554 TGCTGACCGACCAGGGCCG---TCATCTGCGAAATGTT 177588 >seq24 Length=486131 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || |||||||| | | || | ||||| | ||| ||||| || | || | || || Sbjct 141255 ATGAGACCACAAATCTCGCAGATGTGGACTCGGTAGGCATCGGACACCTCGAACAGACGC 141196 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | |||||||| | ||||||||||||||||||||||||||||||| Sbjct 141195 TCCTTCAAAAAGGCCGCGGCACCGTGCGCAATCATACAATCACGCTCCATTTCACCGAAA 141136 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || |||||||| || || || | ||||||| | ||||| || || Sbjct 141135 CGCAGACCACCGTCACGGGCACGACCCTCGACGGGCTGGCGCGT 141092 >seq16 Length=123879 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567 |||||||||||||| |||| || ||||| || || ||| || || |||| ||| || Sbjct 4008 CGTCTCGTTGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGCGCCTTCTCCTCCATC 4067 Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627 || ||||| || ||||| ||| | | || || ||| || || ||||| || || || Sbjct 4068 TTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCG 4127 Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||||| || |||||||| |||||| Sbjct 4128 CGTGACGAGGGCCTGCACACCGACTTTGCC 4157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809453489584