Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq211 158 1e-33 seq86 118 1e-21 seq390 95.1 1e-14 >seq211 Length=310440 Score = 158 bits (174), Expect = 1e-33 Identities = 1012/1602 (63%), Gaps = 60/1602 (4%) Strand=Plus/Plus Query 138433 GCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATC 138492 ||||||||||| || |||||| || |||| || | || || ||| || | | Sbjct 28871 GCAATGATGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCGACCAGGTCCTTGAGC 28930 Query 138493 AGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTG 138552 || | ||| | |||||| || || ||||||| || || || ||| |||||| Sbjct 28931 AGCCACGGGTTCACGACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAGATGTTGGAC 28990 Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| | ||||| || | |||||||| ||||||||||| | || | ||| || |||||| Sbjct 28991 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTCGACGCCGTGGGCATG 29050 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGC-----G 138667 |||| || ||| || || | |||||| |||||| |||||| | Sbjct 29051 GGAGCCATCAGCAGACTGTTGCGGATACCGTGCTCCTTGAT------CTTGAGACGGAGG 29104 Query 138668 ACGACC-AGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC 138726 || || ||||||| | | | || || | |||||| ||| |||| | || ||| Sbjct 29105 GCGTCCCAGTCCCAGAGACCAGACGGCTTGACATCCCACATGTCGAACTGCAGGATGCCC 29164 Query 138727 AAACTTGCGGGACTGCCTTCGTACGAATCGTA--TACACCAAACTCTTGCGCCAACTCGT 138784 |||| ||||| |||||||| ||| | | | || ||| | |||| || Sbjct 29165 TGCGACACGGGGCTGCCCTCGTACGACGAGTAGGTGCCCTCAA-TCTCG-GCCAGGTCCG 29222 Query 138785 TGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGG 138844 ||| || || | | ||| || || ||| ||||||| |||||| |||| Sbjct 29223 ACGACGCAGTCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCGCGGG 29282 Query 138845 CCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGC 138904 |||||| |||| | |||||||| || | ||| || || ||||| || || || | Sbjct 29283 CCTCGGGCGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACAC 29342 Query 138905 CCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAGGATAAT 138961 | || || | ||||| ||||||| || | | | ||| || ||| | || || Sbjct 29343 CGACACCAATGGGGCGGTGGCGCATGTT-GCTGTTCTTG--GCCTCGGGCACGGGGTAGA 29399 Query 138962 AGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATC 139021 |||| ||||||||||| ||| | || || || || |||| || | | | | | Sbjct 29400 AGTTGACATCGATGATGCGGTTCAGGTTGCGGACAACAACCTGGGTGACCT-CGTGCAGC 29458 Query 139022 GT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAA 139080 | | || || || | || ||||| || | |||||||| | | || Sbjct 29459 TTCTTGAAGTCATA---GACCTCGTTGGTGTAG------TCGACAAAC--GACGGCAGGG 29507 Query 139081 --ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGG 139138 | ||| || | |||||| || || || || || ||| | ||| |||||||| || | Sbjct 29508 CCAGCGAAGCCAGGTTGCAGACGGCGACCTCATCAGGGGCCGAGTACTCGACAATCTCCG 29567 Query 139139 CACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAG 139198 |||| || | ||| || || | || | || ||||| || ||||| || Sbjct 29568 TGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGT 29627 Query 139199 CATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGA 139258 || ||||| ||||| | || |||| || || || | ||| | ||| | Sbjct 29628 GGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACC 29687 Query 139259 ACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCG 139314 ||| | | || | | |||| || || | | || ||||||||||||| Sbjct 29688 ACAGCTTCTGGGCCTTAACGGTCTTGATGC-CGC---GGCCCTCCTTCTCGTACTTTTCG 29743 Query 139315 TAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACA 139373 || || | ||||| ||| ||||||||| ||||| || | | |||| || ||| || Sbjct 29744 TACAGAGCCTCGAACTCG-TCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCA 29802 Query 139374 CATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAA 139433 |||||||| ||| |||| ||| || ||| ||| |||||||||| || |||||||||| Sbjct 29803 CATGAGCGTCCACTCGCCATTCTTCTCGACACGCTTCATGAACAGGTCAGGAATCCACAG 29862 Query 139434 AGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAG 139493 || | | || |||||| || || ||| || ||| || | || Sbjct 29863 GGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCGAG 29922 Query 139494 GAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG--- 139550 ||| || || ||||| |||||||| || || || ||||| | || || || Sbjct 29923 GAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATACAGAAGGCACCAGGACGCTT 29982 Query 139551 TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAG 139610 |||||||| || || |||| || ||| |||||||| || |||| ||| || | Sbjct 29983 GTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTATTGAACACACGCAGCATGGGGATGAT 30042 Query 139611 ACCGCTCGCTGTTCCGTTGGTGCTACGG-ATGGGACTGTTGCG-AGCTCGGACGTCATGT 139668 ||| | | || |||||||||| ||| | | || || || |||| | || Sbjct 30043 GCCGTTGGACGTGCCGTTGGTGC--CGGCAATGTACGAGCCCGTCGCACGGATGCGGTGG 30100 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTC 139727 || |||| |||||| |||||| | ||||| || | |||| || | | || || Sbjct 30101 ACGTTGAGGCCGATACCGCCGGCCGTCTTGGAGATCATGGCGCACGTCTTG-AGCGTGTC 30159 Query 139728 GTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGG 139787 ||| || || ||||||||||||| || ||| || ||||| || || || || | Sbjct 30160 GTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGAGGAAGCACGAGGACAGCTGGGC 30219 Query 139788 TAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACAT 139847 | ||||||||| || || || || ||||| ||||| | | || ||||| Sbjct 30220 CTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGAACTTGTTGGACAT 30279 Query 139848 CAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCG 139907 | | ||| || || ||| | | |||| | || ||| ||||||| ||| || Sbjct 30280 GTAGTTGTAGGTCTCAATGACACGTTCAATGTTATCGCCCCAGATGCCGACAGCGACACG 30339 Query 139908 CATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCG 139965 ||| | ||| || ||| || ||| | | | ||| |||| || |||||| | || Sbjct 30340 CATGATCATGTGCTGGGGACGCTCGACGATCTTGCCGTCGAGCTTGAGCAGATAGGAACG 30399 Query 139966 TTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 ||| ||||||||| | ||||||||| |||||||| ||| Sbjct 30400 --CTCGAGGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTCG 30439 >seq86 Length=56920 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || || || ||||| || ||||| || | || Sbjct 129 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACCATTACCCTTGAAGTCGAGAGCTCC 188 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 189 GACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 248 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || |||||||| ||| | | | |||| || |||||| Sbjct 249 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGGACCCTGTCCGACTATAAC 308 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| |||| |||| |||| || ||| Sbjct 309 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTGCGTGGCGGC 356 >seq390 Length=196699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || ||||| || || || || || || || || || | ||||| | || | Sbjct 27578 AAGACCCTTACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACGATCGACAAT 27519 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || || |||| || Sbjct 27518 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATTTTC 27459 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || |||||||||||| | | | |||| || || ||||| || ||||| ||| Sbjct 27458 GCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAGGAGTCG 27399 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| ||||| | || ||||||| || Sbjct 27398 ACCCTGCACCTGGTGCTCCGCCTGCGCGGTGG 27367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895170552960