Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq211 212 6e-50 >seq211 Length=310440 Score = 212 bits (234), Expect = 6e-50 Identities = 994/1550 (64%), Gaps = 65/1550 (4%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 || || || || |||||||| ||||||||||| | | || | ||| ||| | ||| Sbjct 28940 TTCACGACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTAGGGC 28999 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | || | || || |||||| |||| | Sbjct 29000 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTCGACGCCGTGGGCATGGGAGCCATC 29059 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || | ||||| | | ||| ||| | | | ||||||||| Sbjct 29060 AGCAGACTGTTGCGGATACCGTGCTCCTTGATCTTGAGACGGAGGGCGTCCCAGTCCCAG 29119 Query 147073 ATCGACGAG--GGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGG 147128 | ||| || ||| | || | |||||||||| |||| || | || |||| |||| Sbjct 29120 A--GACCAGACGGCTTGACATCCCACATGTCGAACTGCAGGATGCCCTGCGACA--CGGG 29175 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188 ||||| || ||| | |||| | || || || |||| || | || || Sbjct 29176 GCTGCCCTCGTACGACGAGTAGGTGCCCTCAATCTCGGCCAGGTCCGACGACGCAGTCAG 29235 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||| ||| ||| || ||||| || || || || ||| Sbjct 29236 GGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCGCGGGCCTCGGGCGACTC 29295 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | | ||||| |||||| || |||||||| |||| |||||||| |||||| || || || Sbjct 29296 GAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACCAATGGG 29355 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTGGTTGCGATCAATAA 147367 || || ||||||| ||| || |||| | ||| ||| |||| ||| || | Sbjct 29356 GCGGTGGCGCATGTTGCTGTTCTTGGC-CTCGGGCACGGGGTAGAAGTTGACATCGATGA 29414 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAG 147427 | ||| ||||| || || ||||| | || | | || |||| ||| ||||| Sbjct 29415 TGCGGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGCAGCTTCTTGAAGTCATAGA 29474 Query 147428 TCCCGTCT------TCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGA 147481 | ||| |||||| ||| || || ||| | || ||||| ||||||| Sbjct 29475 CCTCGTTGGTGTAGTCGACAA--ACGAC--GG--CAGGGCCAGCGAAGCCAGGTTGCAGA 29528 Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541 |||| ||| || | | | ||||| || || || | |||||||||| || | Sbjct 29529 CGGCGACCTCATCAGGGGCCGAGTACTCGACAATCTCCGTGCACAGGTTGGAGCTGCGGA 29588 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 || |||| || | ||| ||||| || || ||||| ||| ||| | |||||| | | Sbjct 29589 TGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGG 29648 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG-CAGGTCCTGCGCT----CG 147656 | |||||||||| || | || | ||| | || ||| | ||| || || Sbjct 29649 GGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGG-CGTACCACAGCTTCTGGGCCTTAACG 29707 Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTC 147716 | | ||||| |||||||| || |||||| ||||||| ||| |||||||| Sbjct 29708 GTCTTGATGCCG----CGGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCGTC 29763 Query 147717 GCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTC 147776 |||||||| || || ||||| || |||| | || ||||| |||| |||| | | | Sbjct 29764 ACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGCGTCCACTCGCCATT 29823 Query 147777 CGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC 147836 | | || || ||| ||||| || || | |||||| || | |||||||| || Sbjct 29824 CTTCTCGACACGCTTCATGAACAGGTCAGGAATCCACAGGGCCAGGAACAGATCGCGGGC 29883 Query 147837 TTTGCAATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCA-CGCTATAGATGTCGG 147892 | ||||| ||| ||| ||| || || || | | | | ||| ||||| Sbjct 29884 GCGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAGATCGAGGAACTCGA-AGACGTCGG 29939 Query 147893 CGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGA 147949 ||||||| || || | ||||| | ||||| |||||| || |||||||| | Sbjct 29940 CGTGCCACGGCTCGAGGTAGATACAGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCAA 29999 Query 147950 CATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGT 148009 | | ||| | |||| || ||||| |||| |||||| | |||| | | ||||||| Sbjct 30000 CGTAGCGAGCAGTGTTATTGAACACACGCAGCATGGGGATGATGCCGTTGGACGTGCCGT 30059 Query 148010 TGGTG---GAATTGATCTTGCTGCCGCGGGCTCGCAC---TTCG-TGCACGTTAACGCCA 148062 ||||| | | || | || ||| |||||| | || || ||||| | ||| Sbjct 30060 TGGTGCCGGCAATGTACGAGC--CCG-----TCGCACGGATGCGGTGGACGTTGAGGCCG 30112 Query 148063 ATGCCGCCG-CCGTACTTTGATATGGCAGCGCAATCGCCC--AATGTCGTGTAGATGCCG 148119 || |||||| |||| ||| || || ||||| || | | || ||||||||| Sbjct 30113 ATACCGCCGGCCGT-CTTGGAGATCATGGCGCA--CGTCTTGAGCGTGTCGTAGATGCCC 30169 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 || |||||||||| |||| | | | | || ||||| ||| || | |||| Sbjct 30170 TCAATGCTGTCGTCCTTGATGTCGACGAGGAAGCACGAGGACAGCTGGGCCTGGGGCGTG 30229 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || |||||| ||||| ||||| || || || || | ||| | || Sbjct 30230 CCGGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGAACTTGTTGGACATGTAGTTGTAG 30289 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299 |||||||| | ||| |||| ||||| ||||| | ||||| ||||||| |||| Sbjct 30290 GTCTCAATGACACGTTCAATGTTATCGCCCCAGATGCCGACAGCGACACGCATGATCATG 30349 Query 148300 TGCTGTGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGT 148358 ||||| || || ||| | | |||| || || |||||| ||||| | |||||||| Sbjct 30350 TGCTGGGGACGCTCGACGATCTTGCC-GTCGAGCTTGAGCAGATAGGAACGCTCGAGGGT 30408 Query 148359 TTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||| |||||||||||| ||| | || || | ||||| | ||||||| Sbjct 30409 CTTGAAACCAAAGTACTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCCG 30458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608626299520