Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq211 95.1 4e-14 seq16 91.5 5e-13 >seq211 Length=310440 Score = 95.1 bits (104), Expect = 4e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| || || ||| | ||||||||||| ||| ||||||||||| || || || || Sbjct 30046 CGGCATCATCCCCATGCTGCGTGTGTTCAATAACACTGCTCGCTACGTTGACCAGGGTGG 29987 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 | ||| || || || || ||| |||||||| |||||||||||||||||| Sbjct 29986 CAACAAGCGTCCTGGTGCCTTCTGTATCTACCTCGAGCCGTGGCACGCCGAC 29935 >seq16 Length=123879 Score = 91.5 bits (100), Expect = 5e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 443330 GGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGA 443389 |||| ||| |||||| |||||||||||||| |||||||| || ||| |||||| | Sbjct 3577 GGCCTCGTTCTGGACCGCCGAGGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAA 3636 Query 443390 ACGACT-ATCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGA 443448 || || | | || | || ||| | || || |||| |||| ||||| || | Sbjct 3637 CCGCCTGAACGAGG-ACGAGCGCTACTTTGTCTCGCACATCCTGGCTTTCTTCGCCGCCT 3695 Query 443449 GCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCG 443508 |||||| |||||| ||||| || || ||| ||| || ||| | | ||| Sbjct 3696 CCGACGGCATCGTCAACGAGAACCTCGTCGAGCGCTTCAGCGGCGAGGTCCAGGTCCCCG 3755 Query 443509 AGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTAC 443567 ||||||||| |||||||| ||||| | ||||||||||| ||| ||||| |||| Sbjct 3756 AGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTAC 3814 Score = 91.5 bits (100), Expect = 5e-13 Identities = 134/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 443684 ACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTT 443743 ||||||| || || ||| | | |||| || || ||||| |||| ||||| || | || Sbjct 3985 ACGAGAAG-TC-CACCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCCGTCGAGGGTATCTT 4042 Query 443744 GTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTC 443803 || ||| || || |||||||||||||| | || ||||| || || |||| ||| | Sbjct 4043 CTTCTCGGGC-GCCTTCTCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCC 4101 Query 443804 TGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTC 443863 ||||||| ||||| || ||| || |||||||| |||| |||||| ||||| | Sbjct 4102 TGACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCC 4161 Query 443864 TTCTCT 443869 | |||| Sbjct 4162 TGCTCT 4167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588327208560240