Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq211 206 3e-48 seq16 84.2 3e-11 seq393 82.4 1e-10 >seq211 Length=310440 Score = 206 bits (228), Expect = 3e-48 Identities = 1054/1658 (64%), Gaps = 63/1658 (4%) Strand=Plus/Plus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 || ||||| || || || ||| |||| | ||| | ||||| | | ||| |||||| Sbjct 28796 ATCTCCCACACAGTCTTGTACAGAGCCTTGGTCTCAGCGGGGATGTTAGGGATGTTCTGG 28855 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| ||| | | ||| | | |||||| | | ||||| || || || | Sbjct 28856 ATCGAACCGCCCTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCG 28915 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 ||||| |||| || | ||| || | ||||| || || || | | | Sbjct 28916 ACCAGGTCCTTGAGCAGCCACGGGTTCACGACCTGGAACTCGCCGGCCAGCACACGGCGC 28975 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 |||||||||| | ||||| || || ||||| || || || |||| || || | ||| Sbjct 28976 TGGTAGATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTC 29035 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 || || || ||||| || ||||||| |||||||| || | ||| | ||||||||| Sbjct 29036 GACGCCGTGGGCATGGGAGCCATCAGCAGACTGTTGCGGATACCGTGCTCCTTGAT---- 29091 Query 110825 TCCTTGAGAA------CATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGT 110876 ||||||| | |||||||| || || | || || || | ||||||||| Sbjct 29092 --CTTGAGACGGAGGGCGTCCCAGTCCCAGA-GACCAGACGGCTTGACAT-CCCACATGT 29147 Query 110877 CAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGG 110936 | ||||| || | || || ||| |||| ||||| | | |||| || | Sbjct 29148 CGAACTGCAGGATGCCCTGCGACACGGGGCTGCCCTCGTACGACGAGTAGGTGCCCTCAA 29207 Query 110937 CTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 110996 || |||| || | ||| ||||| ||||| || ||||| || ||||| | Sbjct 29208 TCTCGGCCAGGTCCGACGACGCAGTCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCT 29267 Query 110997 CATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATAC 111051 || | ||| ||| || || || || |||| || | || || | Sbjct 29268 TGTTGAGCTCGCGGGCCTCGGGCGACTCGAAGGGCATGCGCAGAGCCAGGAAGG-----C 29322 Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 ||| || ||||| || ||||| | |||||| || | ||| ||||| || | ||| | Sbjct 29323 ATCAGCCAGACCCTGGACACCGACACCAATGGGGCGGTGGCGCATGTT-GCTGTTCTTG- 29380 Query 111112 AGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 111168 | ||| ||||| || || || || |||| ||||| || || | ||||| Sbjct 29381 -GCCTCGGGCACGGGGTAGAAGTTGACATCGATGATGCGGTTCAGGTTGCGGACAACAAC 29439 Query 111169 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT-GACATACT 111227 || |||| || || || || | | ||| | | | || | | | |||| || Sbjct 29440 CTGGGTGACCTCGTGCAGCTTCTTGAAGTCATA-GACCTCGTTGGTGTAGTCGACAAACG 29498 Query 111228 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 111287 || ||||| | || |||| ||||| || || |||||| | | |||||| | Sbjct 29499 ACGGCAGGGCCAGCGAAGCCAGGTTGCAGACGGCGACCTCATCAGGGGCCGAGTACTCGA 29558 Query 111288 AAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCT 111347 ||| || || || | |||||| || || || |||| ||||| ||||| ||||| Sbjct 29559 CAATCTCCGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGC 29618 Query 111348 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAA 111407 |||||| |||||||| |||||| |||| | || ||||| ||||| | | ||| | Sbjct 29619 GGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGA 29678 Query 111408 TAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCG 111463 | || | ||| | | || | | || || || ||| ||| || |||||| |||| Sbjct 29679 TGGCGTACCACAGCTTCTGGGCCTT----AACGGTCTTGATGCCGCGGCCCTCCTTCTCG 29734 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 |||||| ||| || || || ||||| ||||| ||| | || || || || | Sbjct 29735 TACTTTTCGTACAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCG 29794 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || || | || | ||| | ||| | ||| || ||||||||||| ||||| ||| Sbjct 29795 TTAGGGCACATGAGCGTCCACTCGCCATTCTTCTCGACACGCTTCATGAACAGGTCAGGA 29854 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 |||||||||| || ||||| | || |||| || | || ||||| || Sbjct 29855 ATCCACAGGGCCAGGAACAGATCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGC 29914 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | || |||||||| | || || |||||||| ||||| || |||| || | || Sbjct 29915 AGATCGAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATACAGAAGGCACC- 29973 Query 111704 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 ||||| ||| | || | || ||||| || ||| || || || || ||| Sbjct 29974 --AGGACGCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTATTGAACACACGCAGC 30031 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTC 111815 || || || || || | || || || || || || |||||| | || | Sbjct 30032 ATGGGGATGATGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTACGAG--CCCGTCGCAC 30089 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | |||| || | || ||||| || ||| ||| ||||| || ||| | Sbjct 30090 GGATGCGGTGGACGTTGAGGCCGATACCGCCGGCCGTCTTGGAGATCATGGCGCACGTCT 30149 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 | || || | ||||| || | || ||| |||||| || ||| |||||||| || Sbjct 30150 TGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTGATGTCGACGAGGAAGCACGAGG 30209 Query 111936 ACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 111994 ||| ||| || || || || || || ||||| || || || | ||||| |||| | | Sbjct 30210 ACAGCTG-GGCCTGGGGCGTGCCGGCGTTGAAAAGCGTGGGCGAGGCGTGGGTGAAGA-A 30267 Query 111995 CCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 | | | |||||| | || ||| ||||| | |||| ||||||| || || |||||| Sbjct 30268 CTTGTTGGACATGTAGTTGTAGGTCTCAATGACACGTTCAATGTTATCGCCCCAGATGCC 30327 Query 112054 GATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTG 112113 || ||||| ||||||| ||||| ||| || || | || |||| |||||| ||| Sbjct 30328 GACAGCGACACGCATGATCATGTGCTGGGGACGCTCGACGATCTTGCCGTCGAGC--TTG 30385 Query 112114 A--AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | |||||| ||| ||||| |||| ||||||||| Sbjct 30386 AGCAGATAGGAACGCTCGAGGGTCTTGAAACCAAAGTA 30423 >seq16 Length=123879 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || ||||| || || || || || || || |||||| || || Sbjct 4157 GGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGGCC 4098 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| ||||| |||||||| | ||| | || | | |||| | || ||||||||||| Sbjct 4097 GGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGAGAAGGCGCCCGAGAAGAAGAT 4038 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||||| || || || |||| || || | ||| |||| Sbjct 4037 ACCCTCGACGGCAGCGAAAGCAACGAGACGCTGGGCAAAGG 3997 >seq393 Length=187465 Score = 82.4 bits (90), Expect = 1e-10 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 || || || || ||||| |||||||| || || | | ||| || | |||| ||| Sbjct 155239 GCGTCGATTTCGTCAATAAAGACAATGCACGGCGCGCTCTTGCGAGCAGTCGCAAATAGA 155180 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747 ||||| || | | ||||| ||||| ||||||||||| || || | | | || || | Sbjct 155179 TCGCGCACACGTGACGCACCAACACCGACAAACATCTCTACGAACTCGGAACCGCTGA-C 155121 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| || ||| || || || || || ||| | || ||| || || || || || | Sbjct 155120 ACT-GAAGAAGGGCACGCCCGACTCGCCAGCGGTCGCCTTGGCCAGCAGTGTTTTACCGG 155062 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 |||| || ||||| || | ||| || ||||||||||||||||| Sbjct 155061 TACCGGGAGGACCCGACAGGATGGCACCGCGGGGGATCTTGGCACC 155016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028608627200