Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq113 141 3e-28 seq86 127 6e-24 seq67 91.5 4e-13 seq10 91.5 4e-13 >seq113 Length=386244 Score = 141 bits (156), Expect = 3e-28 Identities = 432/667 (65%), Gaps = 17/667 (3%) Strand=Plus/Minus Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || |||||| | || ||||| || | ||| || || || || || Sbjct 101746 ATCATCGCCAATGACCAGGGTAACCGCACCACGCCGTCCTTCGTGGCCTTCACGGACACG 101687 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| ||||||||||| | || || || || | || || || | || ||||| Sbjct 101686 GAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACGGTC 101627 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTGA 349440 || || || ||||| || || || | | || | ||| | || || | || Sbjct 101626 TTCGACGCCAAGCGTCTGATCGGCCGCAAGTTCGCCGACCCCGAGGTC----CAGGCCGA 101571 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATTATTGA 349497 | || || || ||||| | || || ||| ||| || || | ||||| Sbjct 101570 CATGAAGCACTTCCCTTTCAAGGTCGTC------GACCGTGCCGGCAAGCCCGTCATTGA 101517 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| || | || || || | || || || ||||| || ||||| || |||||| | Sbjct 101516 GGTCGAGTTCAAGGGCGAGAACAAGCAGTTCACCCCCGAGGAGATTTCCTCCATGGTTCT 101457 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 | || ||| || | || || | || | |||| || || | | || ||| | Sbjct 101456 CATCAAGATGCGTGAGACCGCCGAGTCCTACCTGGGTGGCACCGTTAACAACGCCGTTGT 101397 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| || ||||| || || || ||||||| || || || || || || ||| Sbjct 101396 CACTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCTACCAAGGACGCCGGTCTCAT 101337 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | || || || | || || || || ||||| || || || ||||| || || Sbjct 101336 TGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCCTACGG 101277 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 ||||| || | | || || || | || || || ||| | ||||||||||| Sbjct 101276 TCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGTGGTGGTAC 101217 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || || || |||| ||||| || || || || || | ||||| || Sbjct 101216 TTTCGATGTTTCGCTCCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCGACTGCCGG 101157 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || || ||||| || || || || || ||||| || ||||| || |||| Sbjct 101156 TGACACTCACCTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCATTTCGTCCAAGA 101097 Query 349918 ATTTAAG 349924 ||| ||| Sbjct 101096 ATTCAAG 101090 >seq86 Length=56920 Score = 127 bits (140), Expect = 6e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| || ||||| | | || || || || || || ||||| || ||||| |||| Sbjct 363 TTTACTGGCCGCCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTAT 304 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || |||||||| || || || ||||||||||| || || ||||| | Sbjct 303 AGTCGGACAGGGTCCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 244 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || ||||| || || | || || || ||||| | || || Sbjct 243 CAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAGC 184 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || |||||||| |||| ||||| || || || || || || ||||||||||| Sbjct 183 TCTCGACTTCAAGGGTAATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129 >seq67 Length=72276 Score = 91.5 bits (100), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||| || || || || || || || Sbjct 65780 ACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 65839 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || ||||||||||| || || ||||| || || || Sbjct 65840 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGG 65899 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || | || ||||| || || | || || ||| || Sbjct 65900 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCAC 65959 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | || || || || || || || || ||||||||||| Sbjct 65960 CTCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 66007 >seq10 Length=127602 Score = 91.5 bits (100), Expect = 4e-13 Identities = 189/281 (67%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 ||||||| || ||||| || || || |||||| || || || ||||| || | || Sbjct 66291 TTACTGTCCCTGCCTACTTCAACGACAACCAGCGCCAGGCCACCAAGGATGCCGGTATCA 66232 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 | || || | || || || | || | || || ||||| || || || ||||| || | Sbjct 66231 TCGCTGGCCTGAACGTCCTCCGTATTGTCAACGAGCCCACCGCCGCCGCCATTGCGTACG 66172 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | || || || | |||| || | ||| || | | ||| | |||||||||| Sbjct 66171 GCCTGGACAAGCT---TGACGGCGAGCGCCAGATTATTGTCTACGATCTTGGTGGTGGTA 66115 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 |||| ||||| || || || | |||| |||| | ||||| ||| || || || | Sbjct 66114 CTTTCGATGTCTCCCTGCTGTCCATTGACCAGGGTGTCTTTGAGGTTCTGGCTACCGCCG 66055 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTC 349897 |||| || ||||| ||||| || ||||| ||| | ||| || Sbjct 66054 GTGACACCCATCTCGGTGGTGAGGATTTCGATCAGCGTATC 66014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515246013066896