Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq211 289 3e-73 seq430 114 1e-20 seq16 87.8 2e-12 >seq211 Length=310440 Score = 289 bits (320), Expect = 3e-73 Identities = 499/720 (69%), Gaps = 6/720 (1%) Strand=Plus/Minus Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACC 53293 |||||| |||||| ||| ||| ||| | | |||| ||| || |||||| |||| || Sbjct 30303 CGTGTCATTGAGACCTACAACTACATGTCCAACAAGTTCTTCACCCACGCCTCGCCCACG 30244 Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 || |||||||| || ||| || | ||| |||| |||||||| || | || ||| Sbjct 30243 CTTTTCAACGCCGGCACGCCCCAGGCCCAGCTGTCCTCGTGCTTCCTCGTCGACATCAAG 30184 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 || ||| || || ||||||||||| ||||||||| ||| ||| ||||||||| | Sbjct 30183 GACGACAGCATTGAGGGCATCTACGACACGCTCAAGACGTGCGCCATGATCTCCAAGACG 30124 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGG 53471 | || |||||||| || || || | || ||||||||| ||| | || | Sbjct 30123 GCCGGCGGTATCGGCCTCAACG--TCCACCGCATCCGTGCGACGGGCTCGTACATTGCCG 30066 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || |||||| || | || ||| | || ||||| || || ||||| ||||| || | Sbjct 30065 GCACCAACGGCACGTCCAACGGCATCATCCCCATGCTGCGTGTGTTCAATAACACTGCTC 30006 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | ||||| |||||||||| ||||| || | ||| |||||||||||||||| Sbjct 30005 GCTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCTGTATCTACCTCGAGCCGT 29946 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 ||||||||||| | | ||||| ||||| ||||| ||| || || | || ||| | | Sbjct 29945 GGCACGCCGACGTCTTCGAGTTCCTCGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCC 29886 Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 || ||| || ||||| || ||||||||||| ||||| |||||| | || |||| Sbjct 29885 GCGCCCGCGATCTGTTCCTGGCCCTGTGGATTCCTGACCTGTTCATGAAGCGTGTCGAGA 29826 Query 53712 AGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTAC 53770 || | | |||||| || |||||||| ||||||||||| ||||| | | || |||| Sbjct 29825 AGAATGGCGAGTGGACGCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTG-CTAC 29767 Query 53771 GGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAG 53830 ||||| ||||| | | |||| | ||||| |||||||| || |||| Sbjct 29766 GGTGACGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCCGCGGCATCAAGACC 29707 Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890 || ||||| | || | ||| | || |||||| || |||| ||||| || | || Sbjct 29706 GTTAAGGCCCAGAAGCTGTGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACCCC 29647 Query 53891 TACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 | |||| |||||||| |||| |||||||||||||||||| | ||| |||| Sbjct 29646 TTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 29587 Score = 127 bits (140), Expect = 2e-24 Identities = 308/452 (68%), Gaps = 21/452 (5%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| ||||| |||| || ||||| || |||||||| | ||||| |||||||| Sbjct 29073 CGCAACAGTCTGCTGATGGCTCCCATGCCCACGGCGTCGACCTCGCAGATTCTGGGCAAC 29014 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| |||||| |||||||||||| |||||| || || || ||| Sbjct 29013 AACGAGTGCTTCGAGCCCTACACGTCCAACATCTACCAGCGCCGTGTGCTGGCCGGCGAG 28954 Query 55604 TT---TGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660 || ||| || ||| | || ||||||||||| | || | |||| Sbjct 28953 TTCCAGGTCGTG---AACCCGTGGCTGCTCAAGGACCTGGTCGACATGGGCCTGTGGTCG 28897 Query 55661 CCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCG-TCCAGAA---TCTGGAG 55714 | || |||| || || | ||| || ||| ||| || ||||||| | | Sbjct 28896 GACAACATGAAGAACCGCATCAT-TGCCGA--GGGCGGTTCGATCCAGAACATCCCTAAC 28840 Query 55715 AT-TCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGAT-TC-CACAGAAGAGT 55771 || || ||| | | ||||| | ||| ||| ||||||||||| || || | | | | Sbjct 28839 ATCCCCGCTGAGAC-CAAGGCTCTGTACAAGACTGTGTGGGAGATCTCGCAACGCACAAT 28781 Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831 || | | ||| || || |||||||||| ||||||||||| ||||| || |||||| Sbjct 28780 -TG-TGCAGATGGCCGCCGACCGTGGTGCGTTTATCGACCAGTCGCAGTCGCTCAACATC 28723 Query 55832 TTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 |||| | || | ||| |||| | | | |||||||| ||| |||||| | Sbjct 28722 CACATGCGTGAGCCGACCATGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTG 28663 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || ||||||||||| |||||||| ||||| || Sbjct 28662 GGTCTCAAGACGGGCATGTACTACCTGCGCAC 28631 >seq430 Length=135585 Score = 114 bits (126), Expect = 1e-20 Identities = 301/450 (67%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || ||||||||||| |||| ||| |||||||| || ||||| | Sbjct 112659 CCAGTACCAATACCGTCGGCACCGTTGACGAGAACCATGGGCACAATGGGTGCGTAGTTC 112600 Query 151936 TCCGGCTCCACC-TGTTGACCGTCATCCATCACGTATTTCAAA-ACGGAATTGTCAGCCG 151993 | ||||| | || || || || || || || | |||| || | | || || Sbjct 112599 TTGGGCTCAATGATGCTGCCC-TCGTCAATGTTGT-TCTCAAGCACAGGCTCATCCATCG 112542 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | | ||| | || |||| | ||| || |||||||| ||||| || | |||||| | Sbjct 112541 GGTTGAACACACGGCGAGCAAAGGGAGACAGGCGCGTGAAAATGTAACGAGCGCTGGCTG 112482 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||| ||||| | || || | ||||| | || ||| ||||| ||||| | Sbjct 112481 CATCCGAACCACCAGAAAGACGAGAACCAAAGTTACCGCTGGGTTCGAGACAGTTGATAT 112422 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAG--ACTCGCTTC 152171 |||| | ||| || || |||| |||| | | || || ||||| ||| | || Sbjct 112421 TGTTCGAGCCAACAAACGTCTGCGCCAGACCAATGATTGTCTGATGCAGCGACTGG--TC 112364 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 |||||| || |||| | | | | | | |||||||||| ||||||| ||| Sbjct 112363 ACCGTGATGGTACGAGGCAAGTTTGGACACGGTACCCGCCAACTCAAACACCTTCTGGTC 112304 Query 152232 CGT--CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 | | ||| ||||||||||| ||||| ||| || |||||||||||| || || ||| Sbjct 112303 CTTGACGTA--GTTCTTCTTGAAACAGGTGTAGATGACCTTGCGCTGGCCAGGCTTGAAA 112246 Query 152290 CCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||| | ||| || ||||| ||| || Sbjct 112245 CCGTCAAGAACGGACGGGATCGAGCGCATG 112216 Score = 96.9 bits (106), Expect = 4e-15 Identities = 224/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 152782 CCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGC 152841 |||||||| || || || ||||| |||| ||||||||| ||| | || ||||| Sbjct 111747 CCCTTGATATGACTACCATCGTGATCCTGATCGGCCATGATCATGAGATGGCCATAGCGG 111688 Query 152842 AGGTCACGTAGTGACCC-GTAGACCTTTCCATG-TTGAAGCCCGAGGATCTTTTTGAGGT 152899 ||| | | | ||| || |||||||| || || ||||| |||| || |||| || Sbjct 111687 AGGCC-CTTGGTGTCCGTGTAGACCTGCTTGTGCTTCAAGCCA-AGGAACTGCTTGATGT 111630 Query 152900 TGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCT 152959 | | ||||| || | ||| | ||| | | | ||||| || || ||| || ||| Sbjct 111629 TCTGGATTTCCTTGTTCTTGGTGATCTGGTCGATTGACGCATCACGCACGTTGAGCAGCT 111570 Query 152960 TTCCCCGGAGTGGAAACACGCCGA-ACGCGTTGCGGCCTACAACGCTCAGACCGGCAATA 153018 | || ||||| || ||||| |||| ||| || | | | | |||| ||||||||| | Sbjct 111569 TACCACGGAGCGGGAACACACCGATACG-GTCGGGATCGAGAACGGCACGACCGGCAACA 111511 Query 153019 GCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGA 153078 || | | || ||||||||||| |||| ||| ||||| || ||||| | | Sbjct 111510 GCCAAACCACGGGCAGAGTCACCCTCTGTGAGAATGAGCGTGCACTCGTGGCCATGCTTG 111451 Query 153079 GTACCGGCCCAGTTGGCGTCGTCAAGCTTG 153108 || || ||| ||||||| || |||||||| Sbjct 111450 GTGCCCGCCAAGTTGGCATCAACAAGCTTG 111421 >seq16 Length=123879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/267 (68%), Gaps = 7/267 (3%) Strand=Plus/Minus Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 |||| ||||||| | |||| || | || ||||| ||||| || || || ||| Sbjct 3848 CGGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCA 3789 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAA 75121 | | |||| | ||||||| | || ||||| | | ||| || || | |||| Sbjct 3788 TCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGACCTGGACCTCGCCGCTGAAGC 3729 Query 75122 ATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCAT 75181 || | ||| ||||| ||||||||||||| ||||||||||| |||||||| | Sbjct 3728 GCTC--GACGAGGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAGAAAGCCAGGATGTG 3671 Query 75182 TTTGATAAAGTGGCGCTCATCGTCAGT---GAGTTTGTCCCAATCCTTCAGGTCCCCCGC 75238 || ||||| |||||| || || | | | |||| ||| || | ||| ||| | Sbjct 3670 CGAGACAAAGTAGCGCTCGTCCTCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGA 3611 Query 75239 CAAATCAATCTCCTCGACCGTCCAGAA 75265 || ||||||||||||| | |||||||| Sbjct 3610 CAGATCAATCTCCTCGGCGGTCCAGAA 3584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213045033600