Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq211 405 6e-108 seq86 161 1e-34 seq390 152 6e-32 seq67 138 1e-27 >seq211 Length=310440 Score = 405 bits (448), Expect = 6e-108 Identities = 1177/1792 (66%), Gaps = 49/1792 (3%) Strand=Plus/Plus Query 79987 GCCGCCTGATCAACGGGTACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGA 80046 ||| |||||||||| | | | ||| || |||| ||| ||| |||| ||||| Sbjct 28586 GCCTCCTGATCAACAG------TGAACTGGATGGGCTGGGCAGCAGCCTGCGTGCGCAGG 28639 Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106 |||||||||||||||||||| ||| |||||||||| | |||||| ||| ||| Sbjct 28640 TAGTACATGCCCGTCTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTG 28699 Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166 | | || || | |||| |||||| || ||||| ||||| ||| || || ||| Sbjct 28700 CCCATGGTCGGCTCACGCATGTGGATGTTGAGCGACTGCGACTGGTCGATAAACGCACCA 28759 Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACA-- 80224 || || || ||||| | | ||||| ||| | || ||||| || || |||| Sbjct 28760 CGGTCGGCGGCCATCTGCACAATTGTGCGTTGCGAGATCTCCCACACAGTCTTGTACAGA 28819 Query 80225 -CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCCTTTACAATT 80283 |||| ||| | || |||| | | | | | |||| ||| |||| Sbjct 28820 GCCTTGGT---CTCAGCGGGGATGTTAGGGATGTTCTGGATCGAACCGCCCTCGGCAATG 28876 Query 80284 T---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTGC 80340 | || |||| | || ||| | || | | | ||| || || | || | Sbjct 28877 ATGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCGACCAGGTCCTTGAGCAGCCAC 28936 Query 80341 TTGTTAATCATGACA---AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 ||| || ||| ||||| || || || || ||| | || | ||| | ||| Sbjct 28937 GGGTT---CACGACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAGATGTTGGACGTG 28993 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 || ||||| || ||||||||| || || ||||| | || |||||| ||||| || Sbjct 28994 TAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTCGACGCCGTGGGCATGGGA 29053 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAA 80517 | | || ||| || || | ||||||| |||||| | || | | | || | Sbjct 29054 GCCATCAGCAGACTGTTGCGGATACCGTGCTCCTTGATCTTGAGACGGAGGGC-GTCCCA 29112 Query 80518 AAATCA-ACCCCA-ACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGC 80573 || | ||| ||| |||| ||||||||||| ||||| |||||||| |||| | Sbjct 29113 GTCCCAGAGACCAGACGGCTTGACATCCCACATGTCGAACTGCAGGATGCCCTGCGACAC 29172 Query 80574 CGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCAT 80633 || ||| || ||| | ||| | |||||| ||| |||||| || ||||| | | Sbjct 29173 GGGGCTGCCCTCGTACGACGAGTAGGTGCCCTCAATCTCGGCCAGGTCCGACGACGCAGT 29232 Query 80634 AAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTC 80693 ||||| ||||| || ||| ||| |||| |||||| | |||| |||| || Sbjct 29233 CAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCGCGGGCCTCGGGCGA 29292 Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753 ||||| | || || || || ||| | |||||||| ||||| || |||| | || Sbjct 29293 CTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACCAAT 29352 Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813 |||||||||||| |||| || |||||| || | ||||| ||||| |||||| Sbjct 29353 GGGGCGGTGGCGCATGTTGCTGTTCTTGGCCTCGGGCACGGGGTAGAAGTTGACATCGAT 29412 Query 80814 GACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTC--- 80870 || ||||||||||||||| ||||||| | || || || || || |||| ||||| Sbjct 29413 GATGCGGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGCAGCTTCTTGAAGTCATA 29472 Query 80871 GAATTGGTTCCCCT--TC-ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGC 80927 || | ||| | || ||||| | ||| ||| ||| || ||||| ||||| ||||| Sbjct 29473 GACCTCGTTGGTGTAGTCGACAAACGACGGCAGGGCCAGCGAAGCCAGGTTGCAGACGGC 29532 Query 80928 CACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGT 80987 ||||| |||| | | ||||||| || |||||||||| || || || || Sbjct 29533 GACCTCATCAGGGGCCGAGTACTCGACAATCTCCGTGCACAGGTTGGAGCTGCGGATGGT 29592 Query 80988 ACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGT 81047 |||||||| |||||||| |||| |||||| ||||||||| |||| | ||| | Sbjct 29593 GCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTT 29652 Query 81048 ACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTT 81107 ||||||||| ||| | || ||||||||||| ||| | || | ||||| || ||| Sbjct 29653 GCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGGGCCTTAACGGTCTT 29712 Query 81108 GCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAA 81166 | | ||| || | | ||||| |||| | ||||||| | |||||| | | Sbjct 29713 GATGCCGCGGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCGTCACCGTAGCA 29772 Query 81167 GTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTA 81226 | |||| ||| | |||||||||||||||||||| || ||| ||| | ||||| | Sbjct 29773 G-TCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGCGTCCACTCGCCATTCTTCTCGA 29831 Query 81227 CAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCT 81286 || ||||||||| |||||| ||||| ||||| |||||| |||||| ||| ||| Sbjct 29832 CACGCTTCATGAACAGGTCAGGAATCCACAGGGCCAGGAACAGATCGCGGGCGCGGACCT 29891 Query 81287 CCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCT 81346 |||| | || ||||| ||||| ||||| || || | || ||| || ||||| |||| Sbjct 29892 CCTCCTTGCCGTGGTTCTTGCGCAGATCGAGGAACTCGAAGACGTCGGCGTGCCACGGCT 29951 Query 81347 C----CAGATAC--ACGGCGATCGACCCCTTGCGACGGCCACCCTGGTTGACGTAACGGG 81400 | |||||| | ||| | | |||| ||||||||||| ||||| || | Sbjct 29952 CGAGGTAGATACAGAAGGCACCAGGACGCTTG---TTGCCACCCTGGTCAACGTAGCGAG 30008 Query 81401 CAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCA 81460 |||| || || ||||||| ||| |||||||| || | ||| ||||| || || Sbjct 30009 CAGTGTTATTGAACACACGCAGCATGGGGATGATGCCGTTGGACGTGCCGTTGGTGCCGG 30068 Query 81461 CGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCA 81518 | || ||| ||| | || || | | || ||| || ||||| || || | | Sbjct 30069 CAATGTACGAGCCCGTCGCACGGATGCGGTGGACGTTG--AGGCCGATACCGCCGGCCGT 30126 Query 81519 CTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTT 81578 ||| || ||| || ||| || | || || || || ||||| ||||| || | || Sbjct 30127 CTTGGAGATCATGGCGCACGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTT 30186 Query 81579 CATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT-TTTTGAGCCGGCATTGAACAGTG 81637 ||||| | | ||| || |||| ||| || || | |||||| ||||| || | Sbjct 30187 GATGTCGACGAGGAAGCACGAGGACAGCTG-GGCCTGGGGCGTGCCGGCGTTGAAAAGCG 30245 Query 81638 TTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTG 81697 | || | ||||| |||| | ||| ||||| || ||||| || |||| ||| Sbjct 30246 TGGGCGAGGCGTGGGTGAAGAACTTGTTGGACATGTAGTTGTAGGTCTCAATGACACGTT 30305 Query 81698 GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||| | || || || |||| ||| |||||||| | ||||| |||||| Sbjct 30306 CAATGTTATCGCCCCAGATGCCGACAGCGACACGCATGATCATGTGCTGGGG 30357 >seq86 Length=56920 Score = 161 bits (178), Expect = 1e-34 Identities = 176/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||||||||| || |||||||| ||||| ||||| || ||| || | Sbjct 129 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACCATTACCCTTGAAGTCGAG--AGCT 186 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||||| || | ||| | || || |||||||||||||| || || || |||| Sbjct 187 CCGACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACC 246 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||||| || || |||||||| ||||| || || |||| || ||||| | ||||||| Sbjct 247 AGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGGACCCTGTCCGACTATA 306 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | | || ||||| ||||| || || || ||| ||||||| || || || || Sbjct 307 ACATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTGCGTGGCGGCCA 358 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 27506 AGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC 27565 |||| || || || ||||||||||| || || |||||||| ||||| |||||||||| | Sbjct 1 AGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCC 60 Query 27566 GTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTC 27625 | || || | ||||| || |||| ||||| || || || || || || |||| || | Sbjct 61 GCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTGCGCCTGC 120 Query 27626 GCGGTGG 27632 | ||||| Sbjct 121 GTGGTGG 127 >seq390 Length=196699 Score = 152 bits (168), Expect = 6e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| |||||||||||||| || || || ||||| ||||| || | || Sbjct 27585 CTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACGAT 27526 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||| || || |||||||||||||| || Sbjct 27525 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCT 27466 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 ||||| ||||| ||||| || ||||||| || ||||| | ||||| || |||| || Sbjct 27465 GATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 27406 Query 27594 GGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || || || || || | || || |||||||| Sbjct 27405 GGAGTCGACCCTGCACCTGGTGCTCCGCCTGCGCGGTGG 27367 >seq67 Length=72276 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || || || || || |||||||| || || | Sbjct 66007 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTTGAGGTGGAA--AGCT 65950 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| | ||| | ||| | || || |||||||||||||| || || || |||| Sbjct 65949 CCGACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACC 65890 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||||| || || |||||||| ||||| |||||||| | || ||||| | ||||| | Sbjct 65889 AGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACA 65830 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| ||| || || || ||| |||| || || ||||| Sbjct 65829 ACATCCAGAAGGAGAGCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGG 65781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307320323840