Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq86 188 2e-42 seq67 167 5e-36 seq390 150 4e-31 seq211 87.8 4e-12 >seq86 Length=56920 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || || |||||||| || | ||||||| |||||| Sbjct 340 AGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGGGTCCGGCCATCT 281 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || |||||||| || | || ||||||||| Sbjct 280 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 221 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| ||||| || || || || || || ||| Sbjct 220 TGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAGCTCTCGACTTCAAGGGTAATGGTC 161 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 160 TTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129 >seq67 Length=72276 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||| ||| || |||||||| || || | ||||| | || || Sbjct 65796 AGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 65855 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 65856 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 65915 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| |||||||| ||||| || ||||| || Sbjct 65916 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTT 65975 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 65976 TTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 66010 >seq390 Length=196699 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| ||||| | ||||| Sbjct 27382 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 27441 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || ||||| || ||||| || || | || ||||||||| Sbjct 27442 TCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 27501 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||| ||||| ||| || ||||| || ||||| ||| Sbjct 27502 TGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTGATGGTC 27561 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || || || || ||||| || || Sbjct 27562 TTGCCGGTAAGGGTCTTCACGAA 27584 >seq211 Length=310440 Score = 87.8 bits (96), Expect = 4e-12 Identities = 183/270 (68%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | |||| ||| || |||||| |||||||| | || Sbjct 29599 GTTCTTCTGGTTGCTCTTGCGGTTGCAG-TGG--TCCTTGTACAGCATGAAGGGGTTGCC 29655 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||| | || ||| |||| ||| | ||| |||| |||||| || ||||| | Sbjct 29656 GGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGGGCCTTAACGGTCTTGAT 29715 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | | || || ||||||||||||| ||| || ||||||| || || ||| || Sbjct 29716 GCCGCGGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCGTCACCGTAGCAGTC 29775 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 | | || || || ||| || ||||| | ||| |||||| || | | || || || Sbjct 29776 AGCCAGGCCAGGGCACTCGTTAGGGCACATGAGCGTCCACTCGCCATTCTTCTCGACACG 29835 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 |||||||| ||||||| |||| | ||| Sbjct 29836 CTTCATGAACAGGTCAGGAATCCACAGGGC 29865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159145584093680