Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq67 150 1e-31 seq86 116 3e-21 seq390 114 9e-21 >seq67 Length=72276 Score = 150 bits (166), Expect = 1e-31 Identities = 172/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || ||||||||||| ||||||||||| |||| Sbjct 65781 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 65840 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| || |||||||| || |||||||||| |||||||| || | || Sbjct 65841 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 65900 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| |||||| ||| || ||| | |||||||||| | ||||| Sbjct 65901 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT--CGATGGTGTCGGAGCTTTCCA 65958 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || || || || |||||||||||||| ||||| || ||||| Sbjct 65959 CCTCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 66007 >seq86 Length=56920 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || ||| |||||| || ||||| || |||| Sbjct 355 CCGCCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 296 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || |||||||||| |||||||| || | || Sbjct 295 AGGGTCCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 236 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| |||||| ||| | | | |||||||||| | || || Sbjct 235 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAGCTCTCGACT 176 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 175 TCAAGGGTAATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 131 CATACCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTC 72 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || ||| | || || |||||||| || |||||||||| |||||||| || Sbjct 71 GGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 15 >seq390 Length=196699 Score = 114 bits (126), Expect = 9e-21 Identities = 149/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || || |||||| ||||||||||| || | || ||| | || || Sbjct 27384 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 27443 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || || || |||| |||||||| |||| || | || ||||| ||| Sbjct 27444 CAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 27503 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | || ||||| | ||| || ||||||| || || ||| Sbjct 27504 GATCTTGGACTTGACATTGT--CGATCGTGTCCGAGGACTCGACCTCCAGGGTGATGGTC 27561 Query 44306 TTTCCCGTGAGGGTCTTCACGAAG 44329 || || || ||||||||||||||| Sbjct 27562 TTGCCGGTAAGGGTCTTCACGAAG 27585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988504650544