Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09] 432 sequences; 37,827,857 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq67 165 8e-36 seq86 149 6e-31 seq390 134 1e-26 seq395 93.3 4e-14 >seq67 Length=72276 Score = 165 bits (182), Expect = 8e-36 Identities = 177/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 65781 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 65840 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||| || || ||||||||||| ||||| | || Sbjct 65841 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 65900 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||| |||| Sbjct 65901 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG--ATGGTGTCGGAGCTTTCCA 65958 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || ||||||||||| || ||||| |||||||||||||| || Sbjct 65959 CCTCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 66010 >seq86 Length=56920 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| || || ||| |||||||||||||||||||||||| Sbjct 356 GCCGCCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 297 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || || ||||||||||| || || ||||||||||| ||||| | || Sbjct 296 CAGGGTCCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGG 237 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| ||| | | | |||||| ||| | Sbjct 236 GATGCCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCAATGGTGTCGGAGCTCTCGA 178 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || || || || ||||| |||||||| |||||||||||||| Sbjct 177 CTTCAAGGGTAATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129 Score = 102 bits (112), Expect = 8e-17 Identities = 96/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || ||||| ||||||||| ||||| |||||||| Sbjct 127 CCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 68 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 || ||||| | || |||||||||||||| || || ||||||||||| ||||| ||||| Sbjct 67 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 8 Query 41755 A 41755 | Sbjct 7 A 7 >seq390 Length=196699 Score = 134 bits (148), Expect = 1e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||| ||||| || ||||||||| ||||| ||||| || Sbjct 27367 CCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 27426 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||||||||| ||||| | ||| Sbjct 27427 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCTGGGGGG 27486 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 27487 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATCGTGTCCGAGGACTCGA 27544 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 |||||| || || || || || || || ||||| ||||| Sbjct 27545 CCTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAA 27584 >seq395 Length=184196 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 85780 CCCCGCCGGGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTA 85839 ||||||||| | |||| || ||||| || || || ||||| ||| ||||||| || Sbjct 28302 CCCCGCCGG-CACCTACGGCCGCATCGCGCCGCGCTCGGGCCTGGCCGCCAAGCACTTTA 28360 Query 85840 TCGACGTGGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGT-CATCATCGTACTC 85898 ||||| |||||| || ||||| ||||||||||||||||| |||| | | || | || Sbjct 28361 TCGACACGGGCGCGGGCGTCATTGACGCCGACTACCGCGGCCACGTGCGTGTTC-TGCTG 28419 Query 85899 TTCAACCACGGCGAAGAGGA 85918 |||||||||| ||| |||| Sbjct 28420 TTCAACCACGACGAGAAGGA 28439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301503558400