Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporothrix_20pallida_20[genbank_20GCA_5F000710705.2_202016-02-09]
432 sequences; 37,827,857 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq67 165 8e-36
seq86 149 6e-31
seq390 134 1e-26
seq395 93.3 4e-14
>seq67
Length=72276
Score = 165 bits (182), Expect = 8e-36
Identities = 177/232 (76%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct 65781 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 65840
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| |||||||||||||| || || ||||||||||| ||||| | ||
Sbjct 65841 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 65900
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | |||||| ||||
Sbjct 65901 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG--ATGGTGTCGGAGCTTTCCA 65958
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| | || || ||||||||||| || ||||| |||||||||||||| ||
Sbjct 65959 CCTCAAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 66010
>seq86
Length=56920
Score = 149 bits (164), Expect = 6e-31
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | ||||| || || ||| ||||||||||||||||||||||||
Sbjct 356 GCCGCCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 297
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| || | || || ||||||||||| || || ||||||||||| ||||| | ||
Sbjct 296 CAGGGTCCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGCGG 237
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| ||| | | | |||||| ||| |
Sbjct 236 GATGCCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCAATGGTGTCGGAGCTCTCGA 178
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | || || || || ||||| |||||||| ||||||||||||||
Sbjct 177 CTTCAAGGGTAATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 129
Score = 102 bits (112), Expect = 8e-17
Identities = 96/121 (79%), Gaps = 1/121 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| || ||||| ||||||||| ||||| ||||||||
Sbjct 127 CCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 68
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754
|| ||||| | || |||||||||||||| || || ||||||||||| ||||| |||||
Sbjct 67 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 8
Query 41755 A 41755
|
Sbjct 7 A 7
>seq390
Length=196699
Score = 134 bits (148), Expect = 1e-26
Identities = 163/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | |||||| ||||| || ||||||||| ||||| ||||| ||
Sbjct 27367 CCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 27426
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| ||||| ||||||||||| ||||| | |||
Sbjct 27427 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCTGGGGGG 27486
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | ||||| ||||| |
Sbjct 27487 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATCGTGTCCGAGGACTCGA 27544
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853
|||||| || || || || || || || ||||| |||||
Sbjct 27545 CCTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAA 27584
>seq395
Length=184196
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/140 (76%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 85780 CCCCGCCGGGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTA 85839
||||||||| | |||| || ||||| || || || ||||| ||| ||||||| ||
Sbjct 28302 CCCCGCCGG-CACCTACGGCCGCATCGCGCCGCGCTCGGGCCTGGCCGCCAAGCACTTTA 28360
Query 85840 TCGACGTGGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGT-CATCATCGTACTC 85898
||||| |||||| || ||||| ||||||||||||||||| |||| | | || | ||
Sbjct 28361 TCGACACGGGCGCGGGCGTCATTGACGCCGACTACCGCGGCCACGTGCGTGTTC-TGCTG 28419
Query 85899 TTCAACCACGGCGAAGAGGA 85918
|||||||||| ||| ||||
Sbjct 28420 TTCAACCACGACGAGAAGGA 28439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301503558400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |