Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stachybotrys_20chartarum_20[genbank_20GCA_5F001021365.1_202015-06- 08] 1,434 sequences; 41,009,036 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq224 91.5 3e-13 seq1324 89.7 1e-12 seq658 89.7 1e-12 >seq224 Length=800728 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | ||| |||||||| | ||| || |||| ||| Sbjct 537956 ATCATCACCGATGCCGTCACTATCGAGCAGGAATTCTTGACCGAGGCCCTTCCCTGCGCC 537897 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | ||||||||||| || ||| ||||||||||| ||||| || || || | Sbjct 537896 CTGCTGGGCATGAACTCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCTGATCGTCTG 537837 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAA---CTCCAAGAACCCCTTTGCCTTTATG 243678 ||||||| | || |||| || || ||||| |||||| |||||| | ||| ||| Sbjct 537836 CTCATCGCCTTGGGCAATGACAAGGTCTACAAGGTCTCCAA---CCCCTTCGACTTCATG 537780 Query 243679 GAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| ||| || || || || || ||||||||||| ||||| || Sbjct 537779 GAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGT 537733 >seq1324 Length=1219284 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||| ||| ||| ||| | || ||||| |||||||||||| || ||| | | || | Sbjct 982869 AGTCGATGGTAGTCATCTCAGTATCGGCGGAGTCGAGATCGTGCTCGACGAACACGGTCT 982928 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || |||| |||||| | | ||| |||| || |||||||| ||| Sbjct 982929 TAACCTCGCTCTGCTTAGGGAAACCCT-CGACCTGTTCGTTGTTGATGGCGCGCATGAGA 982987 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || |||||||| | ||||| || || || |||||||| || | ||||||||||| | Sbjct 982988 GTGGATTTACCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTCAGGCGG 983047 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| || || || || |||| || || || || || || | || Sbjct 983048 AGATGAGTCTGGTTAAGCAGGATCTTGGCACCGTAGGCAAGGGAGAACGTGCAGTTGCAG 983107 Query 334344 AGATCCTCACC 334354 || |||||||| Sbjct 983108 AGGTCCTCACC 983118 >seq658 Length=2797339 Score = 89.7 bits (98), Expect = 1e-12 Identities = 202/291 (69%), Gaps = 12/291 (4%) Strand=Plus/Plus Query 298085 ACGATAGGCGTGATGAACTTCTT-CAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACA 298143 || || || |||||||| ||||| |||||| | ||||| || ||| ||||| Sbjct 799774 ACAATCGGAGTGATGAA-TTCTTGCAAGAAGTCGGGAATGAGGAGGAGAGATGGGAATT- 799831 Query 298144 GCTATGGAA-AAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 298202 || | ||| |||||| |||| ||||| || ||| | || ||| |||| || | Sbjct 799832 GCACTTGAAGAAAGTTGATGAGAAGACCCTTGATATGACTACCATCATGATCCTGATCCG 799891 Query 298203 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTT--TACCGGT 298260 |||| ||||| | |||||| |||||||| |||||| |||| |||| | | | Sbjct 799892 TCATAATCATGAGATGACCATAACGAAGACTCTTTGTGTCTGTGTAGACTTGCTTATGCT 799951 Query 298261 TTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCC- 298318 | ||| || || ||||| |||| || ||| |||||| | |||||| ||||| || | | Sbjct 799952 T--AAGACCCAGGATTTGCTTGATGCTCTG-GATTTCCTGGTTCTTGGTGAT-CTGGTCG 800007 Query 298319 ACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCA 298369 | ||| ||||| | || || | | ||||||||||| ||||| || ||| Sbjct 800008 ATGGAGGCATCTCTCACGTTGAGCATCTTTCCACGAAGCGGGAAGACGCCA 800058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102859736647900