Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq403 214 2e-50 seq225 145 8e-30 seq385 104 2e-17 seq178 87.8 2e-12 >seq403 Length=285126 Score = 214 bits (236), Expect = 2e-50 Identities = 219/283 (77%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||||||||| || |||||||||| ||||||| | || || ||| Sbjct 108291 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTCTCC 108232 Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 |||||| ||||||| | ||| ||||||||| |||||||| ||||||| || Sbjct 108231 AAGGACCTTCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTTTTCATCTCCCAT 108172 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || ||||||||||||||| || ||||| ||||||||||| ||||||| || ||| Sbjct 108171 GTCCTTGCCTTTTTCGCCGCCTCGGATGGCATTGTCAACGAGAACTTGGTCGAACGCTTC 108112 Query 116816 GCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | ||| || || || | |||||||||| ||||||||||| || |||||| ||||| Sbjct 108111 TC-CAGCGAAGTACAAATTCCCGAGGCGCGCTGCTTCTACGGTTTCCAGATCATGATGGA 108053 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| ||||| || | || || ||| |||||||| ||| Sbjct 108052 GAACGTCCACTCTGAGACTTACTCTCTCCTTATCGACACATAC 108010 Score = 185 bits (204), Expect = 9e-42 Identities = 318/455 (70%), Gaps = 5/455 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| || || |||||| | | || | || |||| | | | || | Sbjct 107897 AGAAGGCTGATTGGGCTCTTCGATGGATCTCTGACAAGAACTCCACCTTTGCCAACCGTC 107838 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || || || ||||| ||||| ||||||| || |||||| |||| || | Sbjct 107837 TTGTCGCGTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTTCATTCGCCTCCATCTTCT 107778 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 || | ||||| || || ||||||||||| || || ||| ||||||||||||||| | | Sbjct 107777 GGTTGAAGAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCTCGTG 107718 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||| |||| |||||||||||| |||| ||| | | | || || | Sbjct 107717 ACGAGGGTATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCTCCTCAACAACCGCCCCA 107658 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || ||| ||| || ||| ||||||| || |||| || |||||| ||||||| Sbjct 107657 GCAAGGCTGCTGTCGAGGCTATCATCACCGAAGCTGTCGAGATTGAGCAGGAGTTCCTCA 107598 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 ||| ||||| || |||| ||| || || | || || | | |||| || ||||| Sbjct 107597 GCGACGCGCTTCC-TTGCGCTCTTCTCGGCATGAA-CGCCACTCTCATGTGCCAGTACAT 107540 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||||||||| | ||||| || | || | | | ||||| |||||||| | | Sbjct 107539 TGAGTTCGTCGCCGACCGTCTGCTCCTTGCTCTCGGCAACCCCAAGTACTACAACGCCAC 107480 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 |||||| | ||||| ||| | |||||| |||| Sbjct 107479 CAACCCCTTCGACTTCATGGAGAACATCTCGCTTG 107445 >seq225 Length=197037 Score = 145 bits (160), Expect = 8e-30 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 138690 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCTTGGAGGTGGAATCCAG 138749 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | ||| || || | ||||| ||||||||||| |||||| Sbjct 138750 CGACACCATCGACAACG-TAAAGTCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACC 138808 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| ||||||| || || || || || || |||| || |||||| ||||||| Sbjct 138809 AGCAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGACGGACGGACCCTCTCAGACTACA 138868 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||| | || || ||| | ||| Sbjct 138869 ACATCCAGAAGGAGTCTACACTCCATTTGGTG 138900 Score = 131 bits (144), Expect = 2e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| || |||||| | || || || | |||||| | | | | ||||| Sbjct 137974 TCACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGA 138033 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || |||| ||||| |||||||| ||| | ||||||||||| | |||| ||| |||| Sbjct 138034 GCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAACGCTTGATCTTCGCCGGCA 138093 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || || | |||||||| |||||||||||||||||||||| |||| |||| Sbjct 138094 AGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGC 138153 Query 40892 ATCTAGT 40898 |||| || Sbjct 138154 ATCTTGT 138160 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| | || || || | | Sbjct 138463 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGTTGGAAGTTGAGTCTTCA 138522 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | ||||| || |||| ||||| ||||| ||||| ||||||| Sbjct 138523 GACACGATTGACAATG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCA 138581 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| || || ||||| || |||| || || || | ||||||||| Sbjct 138582 ACAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGTACTCTGAGCGACTACAA 138641 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| |||||||| || Sbjct 138642 CATCCAGAAGGAGTCCACCCTGCATCTTGT 138671 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| |||||||| | || ||||| | |||||| | | | |||| ||||| Sbjct 138259 ACCGGCAAGACCATCACGCTTGAAGTCGAGTCGTCCGACACCATTGACAACG-TCAAGTC 138317 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| |||||||| ||| |||| ||||| || || || | ||| || || Sbjct 138318 GAAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAGCAGCGCCTGATTTTCGCCGGAAA 138377 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || || | |||||||| |||||||||||| ||||||||| |||| ||||| Sbjct 138378 GCAACTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTGCA 138437 Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| || | || || Sbjct 138438 TCTCGTCCTGCGCCTGCGCGGTGG 138461 >seq385 Length=1101030 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || ||||||| ||| ||||| || || || Sbjct 327474 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTCGAG 327415 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| |||||||| ||||||||||||||||||||| | || || || Sbjct 327414 GACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCA 327365 >seq178 Length=462551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| ||||||| || || | |||| ||| || || || || || Sbjct 349978 GACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGAAAGCAACTCGAG 349919 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | |||||||| |||||||||||||||||||||| | || || || || || Sbjct 349918 GATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACACTCCACCTGGT 349863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216533740640