Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq225 107 2e-18
seq385 96.9 3e-15
seq178 93.3 4e-14
>seq225
Length=197037
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||||||| ||| || || |||||||| || |||
Sbjct 138659 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCGAGCTGCTTACCA 138600
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| ||||||||||||| || || ||||| || ||||||||||| ||| || ||
Sbjct 138599 GCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 138540
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||| | ||| || || | || | || ||||| ||||| ||
Sbjct 138539 ACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTCTTGCCAGTCAGGGTC 138480
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 138479 TTGACGAAGATCTGCAT 138463
Score = 107 bits (118), Expect = 2e-18
Identities = 152/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCC 118586
|||||| |||| ||||||||| || || |||||||| || | | || | ||| ||
Sbjct 138900 CACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGGGTCCGTCCGTCT 138843
Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646
|| || || || ||||| |||||||||| ||||| || ||||| |||||||||||||||
Sbjct 138842 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCT 138783
Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706
|| || || || | |||| |||||| || || ||||| | ||| | ||
Sbjct 138782 TGGATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCCACCTCCAAGGTGATGGTC 138723
Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || ||||| || || || || |||||
Sbjct 138722 TTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 138691
Score = 105 bits (116), Expect = 6e-18
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||||||||| ||| || ||||| ||||||||| || |||||
Sbjct 138431 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCG 138372
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || || ||||||||||| || || ||||||||||||||| ||| || ||
Sbjct 138371 GCGAAAATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGAATCTTCGACTTG 138312
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | |||||| | |||||| || | || | || |||||||||| |||
Sbjct 138311 ACGTTGTCAATGGTGTCGGACGACTCGACTTCAAGCGTGATGGTCTTGCCGGTCACTGTT 138252
Query 118722 TTT 118724
||
Sbjct 138251 GTT 138249
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||| || ||||| |||||| ||||| || ||
Sbjct 138148 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 138089
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | || ||||| || || || |||||||||||||| ||| || ||
Sbjct 138088 GCGAAGATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG 138029
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| | |||| |||||| | ||| ||||| | ||| | ||| ||||||||
Sbjct 138028 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGT 137976
>seq385
Length=1101030
Score = 96.9 bits (106), Expect = 3e-15
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| || | ||||| ||||||
Sbjct 327359 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 327418
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
|| || || || ||| |||||||||||||||| || || || ||||||||||||||||
Sbjct 327419 AGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 327476
>seq178
Length=462551
Score = 93.3 bits (102), Expect = 4e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| ||| ||||| || || |||||||| ||| | ||||| |||||||
Sbjct 349863 ACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 349922
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || ||||| ||| |||| | |||||| || || || || ||||||||||||||
Sbjct 349923 AGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 349978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433828211054488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |