Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq225 107 2e-18 seq385 96.9 3e-15 seq178 93.3 4e-14 >seq225 Length=197037 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||||||| ||| || || |||||||| || ||| Sbjct 138659 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCGAGCTGCTTACCA 138600 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||||||||| || || ||||| || ||||||||||| ||| || || Sbjct 138599 GCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 138540 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| || || | || | || ||||| ||||| || Sbjct 138539 ACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTCTTGCCAGTCAGGGTC 138480 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 138479 TTGACGAAGATCTGCAT 138463 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCC 118586 |||||| |||| ||||||||| || || |||||||| || | | || | ||| || Sbjct 138900 CACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGGGTCCGTCCGTCT 138843 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || || || ||||| |||||||||| ||||| || ||||| ||||||||||||||| Sbjct 138842 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCT 138783 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || || || | |||| |||||| || || ||||| | ||| | || Sbjct 138782 TGGATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCCACCTCCAAGGTGATGGTC 138723 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || || || || ||||| Sbjct 138722 TTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 138691 Score = 105 bits (116), Expect = 6e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| || ||||| ||||||||| || ||||| Sbjct 138431 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCG 138372 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || ||||||||||| || || ||||||||||||||| ||| || || Sbjct 138371 GCGAAAATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGAATCTTCGACTTG 138312 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | |||||| || | || | || |||||||||| ||| Sbjct 138311 ACGTTGTCAATGGTGTCGGACGACTCGACTTCAAGCGTGATGGTCTTGCCGGTCACTGTT 138252 Query 118722 TTT 118724 || Sbjct 138251 GTT 138249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||||| |||||| ||||| || || Sbjct 138148 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 138089 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | || ||||| || || || |||||||||||||| ||| || || Sbjct 138088 GCGAAGATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG 138029 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| |||||| | ||| ||||| | ||| | ||| |||||||| Sbjct 138028 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGT 137976 >seq385 Length=1101030 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| || | ||||| |||||| Sbjct 327359 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 327418 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 || || || || ||| |||||||||||||||| || || || |||||||||||||||| Sbjct 327419 AGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 327476 >seq178 Length=462551 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| ||| ||||| || || |||||||| ||| | ||||| ||||||| Sbjct 349863 ACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 349922 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||||| ||| |||| | |||||| || || || || |||||||||||||| Sbjct 349923 AGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 349978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828211054488