Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq225 105 4e-18 seq385 82.4 5e-11 >seq225 Length=197037 Score = 105 bits (116), Expect = 4e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| || || || | || || ||||| ||||||||||||||| Sbjct 138461 CCACCGCGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 138402 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||| || |||||||| || |||||||| || ||| Sbjct 138401 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGA 138342 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| ||| ||||| Sbjct 138341 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACT 138282 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | ||||||||| |||||||| Sbjct 138281 TCAAGCGTGATGGTCTTGCCGGT 138259 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||| ||| |||| |||| || | |||||| || ||||| Sbjct 138653 TCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCGAGCTGCTTACCAGCGAAG 138594 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||| ||||| || | | ||||||||| ||||| ||| | || | Sbjct 138593 ATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTG 138534 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || || || |||| |||||| || ||||| || || || || || Sbjct 138533 TCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTCTTGCCAGTCAGGGTCTTGACG 138474 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 138473 AAGATCTGCAT 138463 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||| || | ||| || ||||| ||||||||||| || Sbjct 138918 TCCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGA 138859 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | ||||| || || || ||||| || |||||||| || Sbjct 138858 GAGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGG 138799 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||||| | | | || | ||| | ||||| || Sbjct 138798 GATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCCAC 138739 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || |||||||| || || ||||| ||||| Sbjct 138738 CTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 138691 Score = 89.7 bits (98), Expect = 3e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| | || || | ||||||||| ||||| Sbjct 138142 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAG 138083 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || |||||||| ||| | || ||||||||| ||||| ||| | || | Sbjct 138082 ATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTG 138023 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367 | || | |||| || || || || | ||||| || |||||||||| Sbjct 138022 TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGTGA 137974 >seq385 Length=1101030 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || |||| ||| | || || ||||| ||||||||||| || Sbjct 327340 TCCACCACGCAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 327399 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | |||||||| ||||| ||||| ||||||||||| ||| Sbjct 327400 AAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 327459 Query 34282 CACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 327460 AATGCCCTCCTTGTC 327474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070369899840