Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq393 174 2e-38 >seq393 Length=255347 Score = 174 bits (192), Expect = 2e-38 Identities = 594/912 (65%), Gaps = 34/912 (4%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 |||||||||||| || | |||| | | | | ||| || || | || ||||||| | Sbjct 192052 TTCGAACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGT 191993 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| || |||| || | || || ||||| || | || |||||||| ||||| || Sbjct 191992 CCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 ||||| | | | | ||||| ||||| ||||| || || ||||| |||| Sbjct 191932 GAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAA-GCCAA 191874 Query 63368 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 | | ||||| ||||| || || | ||| ||||| | | || || || ||||| || | Sbjct 191873 AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCAC 191814 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 |||| || | ||| | ||||||||| || || || | | ||| ||||| | |||||||| Sbjct 191813 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTG 191754 Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGA 63545 || | || ||||| ||| || ||| || ||||||| || | | | | ||| Sbjct 191753 ATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGAT-TCGGTGGACGTTGAGA 191695 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || || || | || ||||| || ||||| || | ||||| |||||||| Sbjct 191694 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCG 191635 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGAGTAG 63663 || ||||| || || |||||| | || || ||| ||||| | ||||| | || | Sbjct 191634 TCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATG-GT-G 191577 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63722 | || || || || | ||| || || ||||| ||||| | |||| || | |||| | | Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAG-TCG 191518 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTA 63780 || |||||||| || || || | ||| | || || || || || || ||||| | Sbjct 191517 TAAGTCTCAATGGCCTTTTCAATGT--CATCGCCGTGTATGCCGACGGCAACTCGCATGA 191460 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||| || || | || ||| ||| |||| | | |||||| || | Sbjct 191459 GCATGTGTTGTGGGCGCTCGGCAACCTTGCCATTTACACGGAGGAGGTAGGACCGCTCGA 191400 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 63900 || || || || || | | ||| |||||||| ||||| | ||| |||| |||| Sbjct 191399 GCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCTCGGTCGTATACTATAGCCGAGTTGA 191340 Query 63901 GCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGA--ATG 63958 ||| || | || | || | | | ||| || || ||||||| ||| Sbjct 191339 GCTCCTCTGCGTGTTCCTGAATGA----CTTTGTA------GACGTAGTCGGAGATCATG 191290 Query 63959 --------TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 64010 || || || || || || || |||||| | | || || || || | Sbjct 191289 GGCTGCCTCTTGCCGTTCTTGGGGTTGACGTAGTTGTAGAGTTCGTCTATGACGGCCGAG 191230 Query 64011 AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCA 64070 ||| | || ||||| | |||||| |||||||| | ||| || | ||||| |||||||| Sbjct 191229 AATTGCTTCTTTGTCTGCTTGTGGAGATTTGACACGGCGATACGCGCGGCGAGAATGGCG 191170 Query 64071 TAATCCGGATGT 64082 || || |||||| Sbjct 191169 TAGTCGGGATGT 191158 Score = 100 bits (110), Expect = 4e-16 Identities = 307/468 (66%), Gaps = 5/468 (1%) Strand=Plus/Minus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||| | ||||||||||| || ||||| |||| | ||||| || |||||||| Sbjct 193215 TCCTGGTCGACGGTGAATTGAATAGGGGCGGAGGCGGCCATGGTACGGAGGTAGTACATG 193156 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153 ||||| || ||||| || ||||||| ||| ||||| ||| | ||| | Sbjct 193155 CCCGTCTTAAGACCAAGCTTCCATCCAGCAAAGTGCATCGACGTGATCTTGCCCATGGTA 193096 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 || || || ||||| |||| || || || ||||| ||||| || | ||| ||| Sbjct 193095 GGCTCCTTCATGTGGATGTTCAACGACTGGGACTGGTCGATAAAGGCACCACGGTCGGCA 193036 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 62272 ||||| | ||||| | || | |||||||||| ||| || |||| ||| ||| | Sbjct 193035 GCCATCTCGATGATTCTGCGCTGCGAGATTTCCCAAACAGTCTTGTAAAGCTC-CTTGGT 192977 Query 62273 ATCTTCTGGAAGGTT-TGTATTC-TG-AATGGATCCACCATCTACCATAATCCTATTCTT 62329 || || || | || | |||| || |||||| ||||| || | || || | ||||| Sbjct 192976 CTCATCGGGGATATTGGGAATTCGTGCAATGGAACCACCCTCGGCGATGATGCGGTTCTT 192917 Query 62330 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTAC 62389 || | ||| ||| | | ||| | | | || || ||||| || || Sbjct 192916 CATGTTCTCAGACCACAGGCCCATGTCGACAAGGTCCTTGAGCAGCCATGGGTTGACCAC 192857 Query 62390 TTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62449 ||||| || |||| | || | |||| |||||| || || || || || | | Sbjct 192856 CTGGAACTCACCAGCGAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCGAAGCA 192797 Query 62450 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 ||| || ||||| | ||| || | || || ||||| ||||| ||||| Sbjct 192796 CTCGTTGTTTCCGAGAATCTGCGAGGTGGAGGCAGTTGGCATGGGTGC 192749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814340693920