Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq393 174 2e-38
>seq393
Length=255347
Score = 174 bits (192), Expect = 2e-38
Identities = 594/912 (65%), Gaps = 34/912 (4%)
Strand=Plus/Minus
Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247
|||||||||||| || | |||| | | | | ||| || || | || ||||||| |
Sbjct 192052 TTCGAACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGT 191993
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307
||| || |||| || | || || ||||| || | || |||||||| ||||| ||
Sbjct 191992 CCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933
Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367
||||| | | | | ||||| ||||| ||||| || || ||||| ||||
Sbjct 191932 GAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAA-GCCAA 191874
Query 63368 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426
| | ||||| ||||| || || | ||| ||||| | | || || || ||||| || |
Sbjct 191873 AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCAC 191814
Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486
|||| || | ||| | ||||||||| || || || | | ||| ||||| | ||||||||
Sbjct 191813 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTG 191754
Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGA 63545
|| | || ||||| ||| || ||| || ||||||| || | | | | |||
Sbjct 191753 ATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGAT-TCGGTGGACGTTGAGA 191695
Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605
|| || || || || | || ||||| || ||||| || | ||||| ||||||||
Sbjct 191694 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCG 191635
Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGAGTAG 63663
|| ||||| || || |||||| | || || ||| ||||| | ||||| | || |
Sbjct 191634 TCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATG-GT-G 191577
Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63722
| || || || || | ||| || || ||||| ||||| | |||| || | |||| | |
Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAG-TCG 191518
Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTA 63780
|| |||||||| || || || | ||| | || || || || || || ||||| |
Sbjct 191517 TAAGTCTCAATGGCCTTTTCAATGT--CATCGCCGTGTATGCCGACGGCAACTCGCATGA 191460
Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840
|||||| || || | || ||| ||| |||| | | |||||| || |
Sbjct 191459 GCATGTGTTGTGGGCGCTCGGCAACCTTGCCATTTACACGGAGGAGGTAGGACCGCTCGA 191400
Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 63900
|| || || || || | | ||| |||||||| ||||| | ||| |||| ||||
Sbjct 191399 GCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCTCGGTCGTATACTATAGCCGAGTTGA 191340
Query 63901 GCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGA--ATG 63958
||| || | || | || | | | ||| || || ||||||| |||
Sbjct 191339 GCTCCTCTGCGTGTTCCTGAATGA----CTTTGTA------GACGTAGTCGGAGATCATG 191290
Query 63959 --------TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 64010
|| || || || || || || |||||| | | || || || || |
Sbjct 191289 GGCTGCCTCTTGCCGTTCTTGGGGTTGACGTAGTTGTAGAGTTCGTCTATGACGGCCGAG 191230
Query 64011 AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCA 64070
||| | || ||||| | |||||| |||||||| | ||| || | ||||| ||||||||
Sbjct 191229 AATTGCTTCTTTGTCTGCTTGTGGAGATTTGACACGGCGATACGCGCGGCGAGAATGGCG 191170
Query 64071 TAATCCGGATGT 64082
|| || ||||||
Sbjct 191169 TAGTCGGGATGT 191158
Score = 100 bits (110), Expect = 4e-16
Identities = 307/468 (66%), Gaps = 5/468 (1%)
Strand=Plus/Minus
Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093
|||| ||| | ||||||||||| || ||||| |||| | ||||| || ||||||||
Sbjct 193215 TCCTGGTCGACGGTGAATTGAATAGGGGCGGAGGCGGCCATGGTACGGAGGTAGTACATG 193156
Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153
||||| || ||||| || ||||||| ||| ||||| ||| | ||| |
Sbjct 193155 CCCGTCTTAAGACCAAGCTTCCATCCAGCAAAGTGCATCGACGTGATCTTGCCCATGGTA 193096
Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213
|| || || ||||| |||| || || || ||||| ||||| || | ||| |||
Sbjct 193095 GGCTCCTTCATGTGGATGTTCAACGACTGGGACTGGTCGATAAAGGCACCACGGTCGGCA 193036
Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 62272
||||| | ||||| | || | |||||||||| ||| || |||| ||| ||| |
Sbjct 193035 GCCATCTCGATGATTCTGCGCTGCGAGATTTCCCAAACAGTCTTGTAAAGCTC-CTTGGT 192977
Query 62273 ATCTTCTGGAAGGTT-TGTATTC-TG-AATGGATCCACCATCTACCATAATCCTATTCTT 62329
|| || || | || | |||| || |||||| ||||| || | || || | |||||
Sbjct 192976 CTCATCGGGGATATTGGGAATTCGTGCAATGGAACCACCCTCGGCGATGATGCGGTTCTT 192917
Query 62330 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTAC 62389
|| | ||| ||| | | ||| | | | || || ||||| || ||
Sbjct 192916 CATGTTCTCAGACCACAGGCCCATGTCGACAAGGTCCTTGAGCAGCCATGGGTTGACCAC 192857
Query 62390 TTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62449
||||| || |||| | || | |||| |||||| || || || || || | |
Sbjct 192856 CTGGAACTCACCAGCGAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCGAAGCA 192797
Query 62450 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497
||| || ||||| | ||| || | || || ||||| ||||| |||||
Sbjct 192796 CTCGTTGTTTCCGAGAATCTGCGAGGTGGAGGCAGTTGGCATGGGTGC 192749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629814340693920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |